Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 1 | 0 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHNEEPKB_9 | 13277 | 14179 | CepA-44 | ARO:3006225 | CepA-44 | 99.00 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GHNEEPKB_9 | 13277 | 14179 | cepA | Unknown Beta-lactam | 100.00 | 100.00 | U05887 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHNEEPKB_9 | 13280 | 14179 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_010992371.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GHNEEPKB_7 | 186081 | 187274 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| GHNEEPKB_7 | 186081 | 187274 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| GHNEEPKB_7 | 186081 | 187274 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GHNEEPKB_2 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_3 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_4 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_5 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_6 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_7 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_8 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_9 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_10 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_11 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_12 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_13 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_14 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_15 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_17 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_18 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_19 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_20 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_21 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_22 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_23 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_24 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_25 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_26 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_27 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_28 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_29 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_30 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_31 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_32 | 1.0 | 0.0 | 1.0 |
| GHNEEPKB_33 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_34 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_35 | 1.0 | 0.0 | 1.0 |
| GHNEEPKB_36 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_37 | 0.0 | 1.0 | 0.0 |
| GHNEEPKB_38 | 1.0 | 0.0 | 1.0 |
| GHNEEPKB_39 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GHNEEPKB_23 | 685197 | 694299 | False | Unknown | VOG1134, |
| GHNEEPKB_27 | 168771 | 177260 | False | Siphoviridae | VOG4581, |
Phigaro v2.4.0 (Database: Jan. 2024 release)