Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JAENDNGA_8 | 189468 | 190370 | CepA-44 | ARO:3006225 | CepA-44 | 99.67 | 100.00 | NG_050386.1 |
| JAENDNGA_4 | 87960 | 89885 | tet(Q) | ARO:3000191 | tet(Q) | 98.13 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JAENDNGA_8 | 189468 | 190370 | cepA-44 | Unknown Beta-lactam | 99.67 | 100.00 | U05885 |
| JAENDNGA_4 | 87960 | 89885 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.92 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JAENDNGA_8 | 189468 | 190367 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_032579291.1 |
| JAENDNGA_4 | 87960 | 89882 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.13 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JAENDNGA_1 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_2 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_3 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_4 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_5 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_6 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_7 | 1.0 | 0.0 | 1.0 |
| JAENDNGA_8 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_9 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_10 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_11 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_12 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_13 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_14 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_15 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_16 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_17 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_18 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_19 | 1.0 | 0.0 | 1.0 |
| JAENDNGA_20 | 1.0 | 0.0 | 1.0 |
| JAENDNGA_21 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_22 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_23 | 1.0 | 0.0 | 1.0 |
| JAENDNGA_24 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_25 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_27 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_28 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_30 | 1.0 | 0.0 | 1.0 |
| JAENDNGA_31 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_32 | 1.0 | 0.0 | 1.0 |
| JAENDNGA_33 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_34 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_35 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_36 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_37 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_38 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_39 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_40 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_41 | 1.0 | 0.0 | 1.0 |
| JAENDNGA_42 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_43 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_44 | 1.0 | 0.0 | 1.0 |
| JAENDNGA_45 | 1.0 | 0.0 | 1.0 |
| JAENDNGA_46 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_47 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_48 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_49 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_50 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_51 | 1.0 | 0.0 | 1.0 |
| JAENDNGA_52 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_53 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_54 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_55 | 1.0 | 0.0 | 1.0 |
| JAENDNGA_56 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_57 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_58 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_59 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_60 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_61 | 0.0 | 1.0 | 0.0 |
| JAENDNGA_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)