Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ILCGCCPI_18 | 3760 | 5685 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ILCGCCPI_18 | 3760 | 5685 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ILCGCCPI_18 | 3763 | 5685 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ILCGCCPI_15 | 32225 | 33805 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ILCGCCPI_1 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_2 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_3 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_4 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_5 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_6 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_7 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_8 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_9 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_10 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_11 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_12 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_13 | 1.0 | 0.0 | 1.0 |
| ILCGCCPI_14 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_15 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_16 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_17 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_18 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_19 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_20 | 1.0 | 0.0 | 1.0 |
| ILCGCCPI_21 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_22 | 1.0 | 0.0 | 1.0 |
| ILCGCCPI_23 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_24 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_25 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_26 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_27 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_28 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_29 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_30 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_31 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_32 | 1.0 | 0.0 | 1.0 |
| ILCGCCPI_33 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_34 | 1.0 | 0.0 | 1.0 |
| ILCGCCPI_35 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_36 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_37 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_38 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_39 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_40 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_41 | 1.0 | 0.0 | 1.0 |
| ILCGCCPI_42 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_43 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_44 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_46 | 1.0 | 0.0 | 1.0 |
| ILCGCCPI_47 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_48 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_49 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_50 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_51 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_52 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_53 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_54 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_55 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_56 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_57 | 1.0 | 0.0 | 1.0 |
| ILCGCCPI_58 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_59 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_60 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_61 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_62 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_63 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_64 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_65 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_66 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_67 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_68 | 1.0 | 0.0 | 1.0 |
| ILCGCCPI_69 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_70 | 0.0 | 1.0 | 0.0 |
| ILCGCCPI_71 | 1.0 | 0.0 | 1.0 |
| ILCGCCPI_72 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)