Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BEGCLCGI_39 | 3 | 1961 | tet(Q) | ARO:3000191 | tet(Q) | 97.40 | 99.39 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BEGCLCGI_39 | 1 | 1913 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.16 | 99.33 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BEGCLCGI_39 | 3 | 1913 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.37 | 99.38 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BEGCLCGI_2 | 52769 | 51189 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BEGCLCGI_1 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_2 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_3 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_4 | 1.0 | 0.0 | 1.0 |
| BEGCLCGI_5 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_6 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_7 | 1.0 | 0.0 | 1.0 |
| BEGCLCGI_8 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_9 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_10 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_11 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_12 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_13 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_14 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_15 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_16 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_17 | 1.0 | 0.0 | 1.0 |
| BEGCLCGI_18 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_19 | 1.0 | 0.0 | 1.0 |
| BEGCLCGI_20 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_21 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_22 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_23 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_24 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_25 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_26 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_27 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_28 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_29 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_30 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_31 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_32 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_33 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_34 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_35 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_36 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_37 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_38 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_39 | 1.0 | 0.0 | 1.0 |
| BEGCLCGI_40 | 1.0 | 0.0 | 1.0 |
| BEGCLCGI_41 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_42 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_43 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_44 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_45 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_46 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_47 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_48 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_49 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_50 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_51 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_52 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_53 | 1.0 | 0.0 | 1.0 |
| BEGCLCGI_54 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_55 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_56 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_58 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_59 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_60 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_61 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_62 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_63 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_64 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_65 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_66 | 1.0 | 0.0 | 1.0 |
| BEGCLCGI_67 | 1.0 | 0.0 | 1.0 |
| BEGCLCGI_68 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_69 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_70 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_71 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_72 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_73 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_74 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_75 | 1.0 | 0.0 | 1.0 |
| BEGCLCGI_76 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_77 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_78 | 1.0 | 0.0 | 1.0 |
| BEGCLCGI_79 | 0.0 | 1.0 | 0.0 |
| BEGCLCGI_80 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BEGCLCGI_24 | 159819 | 176411 | False | Unknown | VOG2211, |
| BEGCLCGI_43 | 20770 | 23977 | False | Unknown | VOG4545 |
Phigaro v2.4.0 (Database: Jan. 2024 release)