Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CECMCFAA_3 | 23227 | 24129 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| CECMCFAA_30 | 49556 | 50893 | tet(Q) | ARO:3000191 | tet(Q) | 96.64 | 67.88 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CECMCFAA_3 | 23227 | 24129 | cepA | Unknown Beta-lactam | 99.56 | 100.00 | FR688022 |
| CECMCFAA_30 | 49556 | 50894 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.85 | 69.52 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CECMCFAA_3 | 23230 | 24129 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| CECMCFAA_30 | 49556 | 50893 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.55 | 69.58 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CECMCFAA_1 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_2 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_3 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_4 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_5 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_6 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_7 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_8 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_9 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_10 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_11 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_12 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_13 | 1.0 | 0.0 | 1.0 |
| CECMCFAA_14 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_15 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_17 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_18 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_19 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_20 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_21 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_22 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_23 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_24 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_25 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_26 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_27 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_28 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_29 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_30 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_31 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_32 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_33 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_34 | 1.0 | 0.0 | 1.0 |
| CECMCFAA_35 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_36 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_37 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_38 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_39 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_40 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_41 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_42 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_43 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_44 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_45 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_46 | 0.0 | 1.0 | 0.0 |
| CECMCFAA_47 | 1.0 | 0.0 | 1.0 |
| CECMCFAA_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)