Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NIBMOGML_48 | 51311 | 53236 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| NIBMOGML_49 | 49769 | 50734 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NIBMOGML_49 | 49769 | 50734 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| NIBMOGML_48 | 51311 | 53236 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NIBMOGML_49 | 49772 | 50734 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| NIBMOGML_48 | 51314 | 53236 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NIBMOGML_1 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_2 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_3 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_4 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_5 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_6 | 1.0 | 0.0 | 1.0 |
| NIBMOGML_7 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_8 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_9 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_10 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_11 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_12 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_13 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_14 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_15 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_16 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_17 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_18 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_19 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_20 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_21 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_22 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_23 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_24 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_25 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_26 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_27 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_28 | 1.0 | 0.0 | 1.0 |
| NIBMOGML_29 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_30 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_31 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_32 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_33 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_34 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_35 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_36 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_37 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_38 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_39 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_40 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_41 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_42 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_43 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_44 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_45 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_46 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_47 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_48 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_49 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_50 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_51 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_52 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_53 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_54 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_55 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_56 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_57 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_58 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_59 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_60 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_61 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_62 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_63 | 1.0 | 0.0 | 1.0 |
| NIBMOGML_64 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_65 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_66 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_67 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_68 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_69 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_70 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_71 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_72 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_73 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_74 | 0.0 | 1.0 | 0.0 |
| NIBMOGML_75 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NIBMOGML_33 | 17960 | 31529 | False | Unknown | VOG4572, |
| NIBMOGML_63 | 82678 | 89906 | False | Siphoviridae | VOG4994, |
| NIBMOGML_63 | 102089 | 110720 | False | Unknown | VOG9345, |
Phigaro v2.4.0 (Database: Jan. 2024 release)