Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AADMBCIE_46 | 36006 | 36971 | CfxA3 | ARO:3003003 | CfxA3 | 99.69 | 100.00 | AF472622.2 |
| AADMBCIE_29 | 30711 | 32636 | tet(Q) | ARO:3000191 | tet(Q) | 97.97 | 97.56 | Z21523.1 |
| AADMBCIE_34 | 3377 | 4192 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AADMBCIE_34 | 3377 | 4192 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| AADMBCIE_46 | 36006 | 36971 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| AADMBCIE_29 | 30711 | 32636 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.44 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AADMBCIE_34 | 3380 | 4192 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| AADMBCIE_46 | 36009 | 36971 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| AADMBCIE_29 | 30714 | 32636 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.97 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AADMBCIE_48 | 85441 | 87021 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AADMBCIE_1 | 1.0 | 0.0 | 1.0 |
| AADMBCIE_2 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_3 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_4 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_5 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_6 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_7 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_8 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_9 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_10 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_11 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_12 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_13 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_14 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_15 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_17 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_18 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_19 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_20 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_21 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_22 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_23 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_24 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_25 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_26 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_27 | 1.0 | 0.0 | 1.0 |
| AADMBCIE_28 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_29 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_30 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_31 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_32 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_33 | 1.0 | 0.0 | 1.0 |
| AADMBCIE_34 | 1.0 | 0.0 | 1.0 |
| AADMBCIE_35 | 1.0 | 0.0 | 1.0 |
| AADMBCIE_36 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_37 | 1.0 | 0.0 | 1.0 |
| AADMBCIE_38 | 1.0 | 0.0 | 1.0 |
| AADMBCIE_39 | 1.0 | 0.0 | 1.0 |
| AADMBCIE_40 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_41 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_42 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_43 | 1.0 | 0.0 | 1.0 |
| AADMBCIE_44 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_45 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_46 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_47 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_48 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_49 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_50 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_51 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_52 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_53 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_54 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_55 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_56 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_57 | 1.0 | 0.0 | 1.0 |
| AADMBCIE_58 | 1.0 | 0.0 | 1.0 |
| AADMBCIE_59 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_60 | 0.0 | 1.0 | 0.0 |
| AADMBCIE_61 | 1.0 | 0.0 | 1.0 |
| AADMBCIE_62 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)