Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHKMMELP_52 | 13263 | 14165 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GHKMMELP_52 | 13263 | 14165 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | L13472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHKMMELP_52 | 13266 | 14165 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GHKMMELP_1 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_2 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_3 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_4 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_5 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_6 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_7 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_8 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_9 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_10 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_11 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_12 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_13 | 1.0 | 0.0 | 1.0 |
| GHKMMELP_14 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_15 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_16 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_17 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_18 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_19 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_20 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_21 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_22 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_23 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_24 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_25 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_26 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_27 | 1.0 | 0.0 | 1.0 |
| GHKMMELP_28 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_29 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_30 | 1.0 | 0.0 | 1.0 |
| GHKMMELP_31 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_32 | 1.0 | 0.0 | 1.0 |
| GHKMMELP_33 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_34 | 1.0 | 0.0 | 1.0 |
| GHKMMELP_35 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_36 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_37 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_38 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_39 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_40 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_41 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_42 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_43 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_44 | 1.0 | 0.0 | 1.0 |
| GHKMMELP_45 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_46 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_47 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_48 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_49 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_50 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_51 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_52 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_53 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_54 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_55 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_56 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_57 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_58 | 0.0 | 1.0 | 0.0 |
| GHKMMELP_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GHKMMELP_36 | 55028 | 60883 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)