Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LOKPKIEH_45 | 87480 | 89405 | tet(Q) | ARO:3000191 | tet(Q) | 97.82 | 97.56 | Z21523.1 |
| LOKPKIEH_1 | 21988 | 22890 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LOKPKIEH_1 | 21988 | 22890 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
| LOKPKIEH_45 | 87480 | 89405 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.87 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LOKPKIEH_1 | 21991 | 22890 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| LOKPKIEH_45 | 87480 | 89402 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.82 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LOKPKIEH_1 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_2 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_3 | 1.0 | 0.0 | 1.0 |
| LOKPKIEH_4 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_5 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_6 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_7 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_9 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_10 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_11 | 1.0 | 0.0 | 1.0 |
| LOKPKIEH_12 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_13 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_14 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_15 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_16 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_17 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_18 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_19 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_20 | 1.0 | 0.0 | 1.0 |
| LOKPKIEH_21 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_22 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_23 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_24 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_25 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_26 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_27 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_28 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_29 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_30 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_31 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_32 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_33 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_34 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_35 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_36 | 1.0 | 0.0 | 1.0 |
| LOKPKIEH_37 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_38 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_39 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_40 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_41 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_42 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_43 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_44 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_45 | 0.0 | 1.0 | 0.0 |
| LOKPKIEH_46 | 1.0 | 0.0 | 1.0 |
| LOKPKIEH_47 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LOKPKIEH_12 | 13348 | 22421 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)