Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HMIDIAAH_9 | 3016 | 3879 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| HMIDIAAH_9 | 1704 | 2840 | tet(X) | ARO:3000205 | tet(X) | 99.21 | 97.42 | M37699.1 |
| HMIDIAAH_9 | 366 | 1505 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HMIDIAAH_9 | 1674 | 2840 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HMIDIAAH_9 | 3016 | 3876 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| HMIDIAAH_9 | 366 | 1502 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| HMIDIAAH_9 | 1674 | 2837 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HMIDIAAH_78 | 11354 | 12934 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HMIDIAAH_1 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_2 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_3 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_4 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_5 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_6 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_7 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_8 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_9 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_10 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_11 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_12 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_13 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_14 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_15 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_16 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_17 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_18 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_19 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_20 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_21 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_22 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_23 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_24 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_25 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_26 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_27 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_28 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_29 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_30 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_31 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_32 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_33 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_34 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_35 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_36 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_37 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_38 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_39 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_40 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_41 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_42 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_43 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_44 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_45 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_46 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_47 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_48 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_49 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_50 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_51 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_52 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_53 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_54 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_55 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_56 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_57 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_58 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_60 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_61 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_62 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_63 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_64 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_65 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_66 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_67 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_68 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_69 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_70 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_71 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_72 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_73 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_74 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_75 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_76 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_77 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_78 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_79 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_81 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_83 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_84 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_85 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_86 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_87 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_88 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_89 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_90 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_91 | 1.0 | 0.0 | 1.0 |
| HMIDIAAH_92 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_93 | 0.0 | 1.0 | 0.0 |
| HMIDIAAH_94 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HMIDIAAH_90 | 2757 | 12150 | True | Unknown | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)