Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 1 | 0 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPMIPHLK_103 | 24599 | 25501 | CepA-44 | ARO:3006225 | CepA-44 | 100.00 | 100.00 | NG_050386.1 |
| JPMIPHLK_103 | 2342 | 3547 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JPMIPHLK_103 | 24599 | 25501 | cepA-44 | Unknown Beta-lactam | 100.00 | 100.00 | U05885 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPMIPHLK_103 | 24599 | 25498 | cepA-44 | extended-spectrum class A beta-lactamase CepA-44 | ALLELEX | 100.00 | 100.00 | WP_032579291.1 |
| JPMIPHLK_103 | 1808 | 2317 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| JPMIPHLK_103 | 2345 | 3547 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JPMIPHLK_63 | 65361 | 66554 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 100.00 | 100.00 | BAA77277 |
| JPMIPHLK_63 | 65361 | 66554 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 96.90 | 100.00 | BAA77275 |
| JPMIPHLK_63 | 65361 | 66554 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 94.89 | 100.00 | BAA77276 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JPMIPHLK_1 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_2 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_3 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_4 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_5 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_6 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_7 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_8 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_9 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_10 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_11 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_12 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_13 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_14 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_15 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_16 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_17 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_18 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_19 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_20 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_21 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_22 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_23 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_24 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_25 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_26 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_27 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_28 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_29 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_30 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_31 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_32 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_33 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_34 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_35 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_36 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_37 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_38 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_39 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_40 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_41 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_42 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_43 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_44 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_45 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_46 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_47 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_48 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_49 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_50 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_51 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_52 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_53 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_54 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_55 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_56 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_57 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_58 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_59 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_60 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_61 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_62 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_63 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_64 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_65 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_66 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_67 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_68 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_69 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_70 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_71 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_72 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_73 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_74 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_75 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_76 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_77 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_78 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_79 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_80 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_81 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_82 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_83 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_84 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_85 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_86 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_87 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_88 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_89 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_90 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_91 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_92 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_93 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_94 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_95 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_96 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_97 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_98 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_99 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_100 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_101 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_102 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_103 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_104 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_105 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_106 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_107 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_108 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_109 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_110 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_111 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_112 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_113 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_114 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_115 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_116 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_117 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_118 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_119 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_120 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_121 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_122 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_123 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_124 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_125 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_126 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_127 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_128 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_129 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_130 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_131 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_132 | 0.0 | 1.0 | 0.0 |
| JPMIPHLK_133 | 1.0 | 0.0 | 1.0 |
| JPMIPHLK_134 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JPMIPHLK_121 | 36597 | 46344 | False | Unknown | VOG3003, |
| JPMIPHLK_129 | 14140 | 22397 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)