Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KPGPIBNH_28 | 514668 | 515402 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KPGPIBNH_28 | 514668 | 515402 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | M15332 |
| KPGPIBNH_28 | 525314 | 526083 | mef(A) | Erythromycin, Azithromycin | 94.94 | 63.22 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KPGPIBNH_28 | 514671 | 515402 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_014387027.1 |
| KPGPIBNH_28 | 525311 | 526081 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 97.67 | 62.99 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KPGPIBNH_29 | 29632 | 28052 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KPGPIBNH_1 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_2 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_3 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_4 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_5 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_6 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_7 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_8 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_9 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_10 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_11 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_12 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_13 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_15 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_16 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_17 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_18 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_19 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_20 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_21 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_22 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_23 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_24 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_25 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_26 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_27 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_28 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_29 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_30 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_31 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_32 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_33 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_34 | 1.0 | 0.0 | 1.0 |
| KPGPIBNH_35 | 1.0 | 0.0 | 1.0 |
| KPGPIBNH_36 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_37 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_38 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_39 | 0.0 | 1.0 | 0.0 |
| KPGPIBNH_40 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KPGPIBNH_17 | 221313 | 229642 | False | Unknown | VOG0982, |
| KPGPIBNH_17 | 274867 | 288629 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)