Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IFBOFGCH_6 | 1090 | 2226 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| IFBOFGCH_6 | 2 | 877 | ErmF | ARO:3000498 | ErmF | 99.62 | 109.40 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IFBOFGCH_6 | 77 | 877 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| IFBOFGCH_6 | 1090 | 2256 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IFBOFGCH_6 | 77 | 874 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| IFBOFGCH_6 | 1093 | 2256 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IFBOFGCH_6 | 38683 | 40263 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IFBOFGCH_1 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_2 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_3 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_4 | 1.0 | 0.0 | 1.0 |
| IFBOFGCH_5 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_6 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_7 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_8 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_9 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_10 | 1.0 | 0.0 | 1.0 |
| IFBOFGCH_11 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_12 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_13 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_14 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_15 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_16 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_17 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_18 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_20 | 1.0 | 0.0 | 1.0 |
| IFBOFGCH_21 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_22 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_23 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_24 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_25 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_26 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_28 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_29 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_30 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_31 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_32 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_33 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_34 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_35 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_36 | 1.0 | 0.0 | 1.0 |
| IFBOFGCH_37 | 1.0 | 0.0 | 1.0 |
| IFBOFGCH_38 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_39 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_40 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_41 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_42 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_43 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_44 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_45 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_46 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_47 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_48 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_49 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_50 | 0.0 | 1.0 | 0.0 |
| IFBOFGCH_51 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IFBOFGCH_31 | 19119 | 22340 | False | Myoviridae | VOG6495, |
Phigaro v2.4.0 (Database: Jan. 2024 release)