Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CNPPNAMO_14 | 178630 | 179532 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
| CNPPNAMO_14 | 156377 | 157582 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| CNPPNAMO_14 | 37387 | 39312 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CNPPNAMO_14 | 178630 | 179532 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
| CNPPNAMO_14 | 37387 | 39312 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| CNPPNAMO_1 | 331864 | 333081 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CNPPNAMO_14 | 178630 | 179529 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| CNPPNAMO_14 | 155843 | 156352 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CNPPNAMO_14 | 37390 | 39312 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| CNPPNAMO_14 | 156380 | 157582 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| CNPPNAMO_1 | 331861 | 333081 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CNPPNAMO_1 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_2 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_3 | 1.0 | 0.0 | 1.0 |
| CNPPNAMO_4 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_5 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_6 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_7 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_8 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_9 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_10 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_11 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_12 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_13 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_14 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_15 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_16 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_17 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_18 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_19 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_20 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_21 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_22 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_23 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_24 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_25 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_26 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_27 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_28 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_29 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_30 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_31 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_32 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_33 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_34 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_35 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_37 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_38 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_39 | 0.0 | 1.0 | 0.0 |
| CNPPNAMO_40 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CNPPNAMO_7 | 125134 | 137843 | False | Siphoviridae | VOG3349, |
Phigaro v2.4.0 (Database: Jan. 2024 release)