Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NKHOGCEA_78 | 35892 | 36629 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
| NKHOGCEA_60 | 20685 | 21587 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NKHOGCEA_60 | 20685 | 21587 | cepA | Unknown Beta-lactam | 100.00 | 100.00 | L13472 |
| NKHOGCEA_78 | 35892 | 36629 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NKHOGCEA_60 | 20685 | 21584 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| NKHOGCEA_78 | 35892 | 36626 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NKHOGCEA_1 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_2 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_3 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_4 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_5 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_6 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_7 | 1.0 | 0.0 | 1.0 |
| NKHOGCEA_8 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_9 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_10 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_11 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_12 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_13 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_14 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_15 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_16 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_17 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_18 | 1.0 | 0.0 | 1.0 |
| NKHOGCEA_19 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_20 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_21 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_22 | 1.0 | 0.0 | 1.0 |
| NKHOGCEA_23 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_24 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_25 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_26 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_27 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_28 | 1.0 | 0.0 | 1.0 |
| NKHOGCEA_29 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_30 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_31 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_32 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_33 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_34 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_35 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_36 | 1.0 | 0.0 | 1.0 |
| NKHOGCEA_37 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_38 | 1.0 | 0.0 | 1.0 |
| NKHOGCEA_39 | 1.0 | 0.0 | 1.0 |
| NKHOGCEA_40 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_41 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_42 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_43 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_44 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_45 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_46 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_47 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_48 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_49 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_50 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_51 | 1.0 | 0.0 | 1.0 |
| NKHOGCEA_52 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_53 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_54 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_55 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_56 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_57 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_58 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_59 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_60 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_61 | 1.0 | 0.0 | 1.0 |
| NKHOGCEA_62 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_63 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_64 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_65 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_66 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_67 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_68 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_69 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_70 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_71 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_72 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_73 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_74 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_75 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_76 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_77 | 1.0 | 0.0 | 1.0 |
| NKHOGCEA_78 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_79 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_80 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_81 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_82 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_83 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_84 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_85 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_86 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_87 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_88 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_89 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_90 | 1.0 | 0.0 | 1.0 |
| NKHOGCEA_91 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_92 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_93 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_94 | 0.0 | 1.0 | 0.0 |
| NKHOGCEA_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NKHOGCEA_25 | 25716 | 34727 | False | Siphoviridae | VOG0572, |
| NKHOGCEA_78 | 11093 | 14499 | True | Unknown | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)