Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDFIAMEC_43 | 567546 | 568751 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.00 | 100.00 | AF251288.1 |
| HDFIAMEC_4 | 75283 | 76248 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HDFIAMEC_4 | 75283 | 76248 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| HDFIAMEC_4 | 75283 | 76248 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| HDFIAMEC_4 | 75283 | 76248 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| HDFIAMEC_4 | 75283 | 76248 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDFIAMEC_4 | 75286 | 76248 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| HDFIAMEC_43 | 567012 | 567521 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| HDFIAMEC_43 | 567549 | 568751 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.00 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HDFIAMEC_34 | 164707 | 163127 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HDFIAMEC_1 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_2 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_3 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_4 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_5 | 1.0 | 0.0 | 1.0 |
| HDFIAMEC_6 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_7 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_8 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_9 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_10 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_11 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_12 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_13 | 1.0 | 0.0 | 1.0 |
| HDFIAMEC_14 | 1.0 | 0.0 | 1.0 |
| HDFIAMEC_16 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_17 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_18 | 1.0 | 0.0 | 1.0 |
| HDFIAMEC_19 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_20 | 1.0 | 0.0 | 1.0 |
| HDFIAMEC_21 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_22 | 1.0 | 0.0 | 1.0 |
| HDFIAMEC_23 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_24 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_25 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_26 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_27 | 1.0 | 0.0 | 1.0 |
| HDFIAMEC_28 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_29 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_30 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_31 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_32 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_33 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_34 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_35 | 1.0 | 0.0 | 1.0 |
| HDFIAMEC_36 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_37 | 1.0 | 0.0 | 1.0 |
| HDFIAMEC_38 | 1.0 | 0.0 | 1.0 |
| HDFIAMEC_39 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_40 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_41 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_42 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_43 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_44 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_45 | 1.0 | 0.0 | 1.0 |
| HDFIAMEC_46 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_47 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_48 | 1.0 | 0.0 | 1.0 |
| HDFIAMEC_49 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_50 | 0.0 | 1.0 | 0.0 |
| HDFIAMEC_51 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HDFIAMEC_29 | 7880 | 19233 | False | Siphoviridae | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)