Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OIFCHCAH_52 | 92198 | 92932 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| OIFCHCAH_31 | 80982 | 81884 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OIFCHCAH_52 | 92198 | 92932 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | M15332 |
| OIFCHCAH_31 | 80982 | 81884 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | L13472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OIFCHCAH_31 | 80985 | 81884 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005795628.1 |
| OIFCHCAH_52 | 92198 | 92929 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.18 | 100.00 | WP_014387027.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OIFCHCAH_1 | 1.0 | 0.0 | 1.0 |
| OIFCHCAH_2 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_3 | 1.0 | 0.0 | 1.0 |
| OIFCHCAH_4 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_5 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_6 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_7 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_8 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_9 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_10 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_11 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_12 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_13 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_14 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_15 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_16 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_17 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_18 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_19 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_20 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_21 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_22 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_23 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_24 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_25 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_26 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_27 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_28 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_29 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_30 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_31 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_32 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_33 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_34 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_35 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_36 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_37 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_38 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_39 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_40 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_41 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_42 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_43 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_44 | 1.0 | 0.0 | 1.0 |
| OIFCHCAH_45 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_46 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_47 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_48 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_49 | 1.0 | 0.0 | 1.0 |
| OIFCHCAH_50 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_51 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_52 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_53 | 1.0 | 0.0 | 1.0 |
| OIFCHCAH_54 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_55 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_56 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_57 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_58 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_59 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_60 | 1.0 | 0.0 | 1.0 |
| OIFCHCAH_61 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_62 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_63 | 0.0 | 1.0 | 0.0 |
| OIFCHCAH_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OIFCHCAH_1 | 3990 | 12479 | False | Siphoviridae | VOG4581, |
Phigaro v2.4.0 (Database: Jan. 2024 release)