Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIKKFKAH_19 | 199646 | 200782 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| GIKKFKAH_19 | 198633 | 199433 | ErmF | ARO:3000498 | ErmF | 99.25 | 100.00 | M17124.1 |
| GIKKFKAH_9 | 149640 | 150845 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| GIKKFKAH_9 | 9131 | 11056 | tet(Q) | ARO:3000191 | tet(Q) | 99.53 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GIKKFKAH_19 | 199646 | 200812 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| GIKKFKAH_19 | 198633 | 199433 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| GIKKFKAH_9 | 9131 | 11056 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GIKKFKAH_9 | 149106 | 149615 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GIKKFKAH_19 | 199649 | 200812 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| GIKKFKAH_19 | 198633 | 199430 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_002682030.1 |
| GIKKFKAH_9 | 9131 | 11053 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_002560998.1 |
| GIKKFKAH_9 | 149643 | 150845 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GIKKFKAH_33 | 85665 | 87245 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GIKKFKAH_1 | 1.0 | 0.0 | 1.0 |
| GIKKFKAH_2 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_3 | 1.0 | 0.0 | 1.0 |
| GIKKFKAH_4 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_5 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_6 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_8 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_9 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_10 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_11 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_12 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_13 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_14 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_15 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_16 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_17 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_18 | 1.0 | 0.0 | 1.0 |
| GIKKFKAH_19 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_20 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_21 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_22 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_23 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_24 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_25 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_26 | 1.0 | 0.0 | 1.0 |
| GIKKFKAH_27 | 1.0 | 0.0 | 1.0 |
| GIKKFKAH_28 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_29 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_30 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_31 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_32 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_33 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_34 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_35 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_36 | 1.0 | 0.0 | 1.0 |
| GIKKFKAH_37 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_38 | 1.0 | 0.0 | 1.0 |
| GIKKFKAH_39 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_40 | 1.0 | 0.0 | 1.0 |
| GIKKFKAH_41 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_42 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_43 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_44 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_45 | 1.0 | 0.0 | 1.0 |
| GIKKFKAH_46 | 1.0 | 0.0 | 1.0 |
| GIKKFKAH_47 | 0.0 | 1.0 | 0.0 |
| GIKKFKAH_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GIKKFKAH_23 | 53571 | 61756 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)