Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GGHIMHOH_39 | 14711 | 15220 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GGHIMHOH_6 | 27585 | 26005 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GGHIMHOH_1 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_2 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_3 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_4 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_5 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_6 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_7 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_8 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_9 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_10 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_11 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_12 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_13 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_14 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_15 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_16 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_17 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_18 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_19 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_20 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_21 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_22 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_23 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_24 | 1.0 | 0.0 | 1.0 |
| GGHIMHOH_25 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_26 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_27 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_28 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_29 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_30 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_31 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_32 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_33 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_34 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_35 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_36 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_37 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_38 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_39 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_40 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_41 | 1.0 | 0.0 | 1.0 |
| GGHIMHOH_42 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_43 | 1.0 | 0.0 | 1.0 |
| GGHIMHOH_44 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_45 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_46 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_47 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_48 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_49 | 1.0 | 0.0 | 1.0 |
| GGHIMHOH_50 | 0.0 | 1.0 | 0.0 |
| GGHIMHOH_51 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GGHIMHOH_8 | 237478 | 247691 | False | Siphoviridae | VOG2124, |
| GGHIMHOH_37 | 1541 | 26058 | False | Siphoviridae | VOG0657, |
Phigaro v2.4.0 (Database: Jan. 2024 release)