Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CODLAEJG_11 | 102245 | 103450 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| CODLAEJG_15 | 35452 | 36267 | ErmF | ARO:3000498 | ErmF | 99.25 | 101.88 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CODLAEJG_15 | 35468 | 36267 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 99.88 | M17808 |
| CODLAEJG_15 | 36480 | 37648 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CODLAEJG_10 | 94773 | 95678 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| CODLAEJG_15 | 35467 | 36264 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| CODLAEJG_11 | 103475 | 103984 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CODLAEJG_11 | 102245 | 103447 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| CODLAEJG_15 | 36483 | 37436 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | PARTIALX | 97.80 | 81.70 | WP_008651082.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CODLAEJG_38 | 11354 | 12934 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CODLAEJG_1 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_2 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_3 | 1.0 | 0.0 | 1.0 |
| CODLAEJG_5 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_6 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_7 | 1.0 | 0.0 | 1.0 |
| CODLAEJG_8 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_9 | 1.0 | 0.0 | 1.0 |
| CODLAEJG_10 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_11 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_12 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_13 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_14 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_15 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_16 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_17 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_18 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_19 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_20 | 1.0 | 0.0 | 1.0 |
| CODLAEJG_21 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_23 | 1.0 | 0.0 | 1.0 |
| CODLAEJG_24 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_25 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_26 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_27 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_28 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_29 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_30 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_31 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_32 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_33 | 1.0 | 0.0 | 1.0 |
| CODLAEJG_34 | 1.0 | 0.0 | 1.0 |
| CODLAEJG_35 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_36 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_37 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_38 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_39 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_40 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_41 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_42 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_43 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_44 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_45 | 1.0 | 0.0 | 1.0 |
| CODLAEJG_46 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_47 | 1.0 | 0.0 | 1.0 |
| CODLAEJG_48 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_49 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_50 | 1.0 | 0.0 | 1.0 |
| CODLAEJG_51 | 0.0 | 1.0 | 0.0 |
| CODLAEJG_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CODLAEJG_24 | 3158 | 6595 | False | Unknown | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)