Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DANAGAAM_77 | 1860 | 3785 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DANAGAAM_77 | 1860 | 3785 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DANAGAAM_77 | 1860 | 3782 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DANAGAAM_39 | 67960 | 69540 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DANAGAAM_1 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_2 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_3 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_4 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_5 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_6 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_7 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_8 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_9 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_10 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_12 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_13 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_14 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_15 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_16 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_17 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_18 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_19 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_20 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_21 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_22 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_23 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_24 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_25 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_26 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_27 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_28 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_29 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_30 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_31 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_32 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_33 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_34 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_35 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_36 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_37 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_38 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_39 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_40 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_41 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_42 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_43 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_44 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_45 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_46 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_47 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_48 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_49 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_50 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_51 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_52 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_53 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_54 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_55 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_56 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_57 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_58 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_59 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_61 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_62 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_63 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_64 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_65 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_66 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_67 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_68 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_69 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_70 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_71 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_72 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_73 | 1.0 | 0.0 | 1.0 |
| DANAGAAM_74 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_75 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_76 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_77 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_78 | 0.0 | 1.0 | 0.0 |
| DANAGAAM_79 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DANAGAAM_75 | 3266 | 6703 | False | Unknown | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)