Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFIDKOHG_19 | 99198 | 100403 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFIDKOHG_19 | 100428 | 100937 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| LFIDKOHG_19 | 99198 | 100400 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LFIDKOHG_8 | 77838 | 79418 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFIDKOHG_1 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_2 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_3 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_4 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_5 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_6 | 1.0 | 0.0 | 1.0 |
| LFIDKOHG_7 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_8 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_9 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_10 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_11 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_12 | 1.0 | 0.0 | 1.0 |
| LFIDKOHG_13 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_14 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_15 | 1.0 | 0.0 | 1.0 |
| LFIDKOHG_16 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_17 | 1.0 | 0.0 | 1.0 |
| LFIDKOHG_18 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_19 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_20 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_21 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_22 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_23 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_24 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_25 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_26 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_27 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_28 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_29 | 1.0 | 0.0 | 1.0 |
| LFIDKOHG_30 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_31 | 1.0 | 0.0 | 1.0 |
| LFIDKOHG_32 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_33 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_34 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_35 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_36 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_37 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_38 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_39 | 1.0 | 0.0 | 1.0 |
| LFIDKOHG_40 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_41 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_42 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_43 | 1.0 | 0.0 | 1.0 |
| LFIDKOHG_44 | 1.0 | 0.0 | 1.0 |
| LFIDKOHG_45 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_46 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_47 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_48 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_49 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_50 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_51 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_52 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_53 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_54 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_55 | 1.0 | 0.0 | 1.0 |
| LFIDKOHG_56 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_57 | 1.0 | 0.0 | 1.0 |
| LFIDKOHG_58 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_59 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_60 | 0.0 | 1.0 | 0.0 |
| LFIDKOHG_61 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFIDKOHG_38 | 267588 | 272370 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)