Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ABDPPILP_7 | 2 | 1609 | tet(Q) | ARO:3000191 | tet(Q) | 98.13 | 81.58 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ABDPPILP_7 | 1 | 1609 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.51 | 83.54 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ABDPPILP_7 | 2 | 1609 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 98.13 | 83.62 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ABDPPILP_43 | 31362 | 29782 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ABDPPILP_1 | 1.0 | 0.0 | 1.0 |
| ABDPPILP_2 | 1.0 | 0.0 | 1.0 |
| ABDPPILP_3 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_4 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_5 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_6 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_7 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_9 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_10 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_11 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_12 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_13 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_14 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_15 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_16 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_17 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_18 | 1.0 | 0.0 | 1.0 |
| ABDPPILP_19 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_20 | 1.0 | 0.0 | 1.0 |
| ABDPPILP_21 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_22 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_23 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_24 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_25 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_26 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_27 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_28 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_29 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_30 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_31 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_32 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_33 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_34 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_35 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_36 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_37 | 1.0 | 0.0 | 1.0 |
| ABDPPILP_39 | 1.0 | 0.0 | 1.0 |
| ABDPPILP_40 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_41 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_42 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_43 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_44 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_45 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_46 | 0.0 | 1.0 | 0.0 |
| ABDPPILP_47 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ABDPPILP_3 | 86545 | 102355 | True | Myoviridae | VOG0275, |
| ABDPPILP_16 | 546819 | 557443 | False | Myoviridae | VOG0083, |
| ABDPPILP_30 | 9043 | 17149 | False | Siphoviridae | VOG4751, |
Phigaro v2.4.0 (Database: Jan. 2024 release)