Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| APHGKKAL_5 | 152652 | 153140 | nimE | ARO:3007107 | nimE | 81.48 | 95.29 | CP036548.1 |
| APHGKKAL_62 | 30297 | 31502 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.00 | 100.00 | AF251288.1 |
| APHGKKAL_12 | 17661 | 19586 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| APHGKKAL_12 | 17661 | 19586 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | L33696 |
| APHGKKAL_5 | 152652 | 153131 | nimE | Metronidazole | 81.46 | 93.57 | AM042593 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| APHGKKAL_62 | 31527 | 32036 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| APHGKKAL_12 | 17664 | 19586 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| APHGKKAL_62 | 30297 | 31499 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.00 | 100.00 | WP_063853729.1 |
| APHGKKAL_5 | 152652 | 153137 | nimE | 5-nitroimidazole reductase NimE | BLASTX | 81.48 | 95.29 | WP_005812773.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| APHGKKAL_29 | 18357 | 16777 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| APHGKKAL_1 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_2 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_3 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_4 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_5 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_6 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_7 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_8 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_9 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_10 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_11 | 1.0 | 0.0 | 1.0 |
| APHGKKAL_12 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_13 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_14 | 1.0 | 0.0 | 1.0 |
| APHGKKAL_15 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_17 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_18 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_19 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_20 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_21 | 1.0 | 0.0 | 1.0 |
| APHGKKAL_22 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_23 | 1.0 | 0.0 | 1.0 |
| APHGKKAL_24 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_25 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_26 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_27 | 1.0 | 0.0 | 1.0 |
| APHGKKAL_28 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_29 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_30 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_31 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_32 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_33 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_34 | 1.0 | 0.0 | 1.0 |
| APHGKKAL_35 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_36 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_37 | 1.0 | 0.0 | 1.0 |
| APHGKKAL_38 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_39 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_40 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_41 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_42 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_43 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_44 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_45 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_46 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_47 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_48 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_49 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_50 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_51 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_52 | 1.0 | 0.0 | 1.0 |
| APHGKKAL_53 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_54 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_55 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_56 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_57 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_58 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_59 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_60 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_61 | 1.0 | 0.0 | 1.0 |
| APHGKKAL_62 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_63 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_64 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_65 | 0.0 | 1.0 | 0.0 |
| APHGKKAL_66 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| APHGKKAL_2 | 40034 | 49785 | True | Unknown | VOG8253, |
| APHGKKAL_50 | 36007 | 39989 | False | Siphoviridae | VOG0704, |
Phigaro v2.4.0 (Database: Jan. 2024 release)