Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJDCBENB_48 | 149617 | 150417 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| HJDCBENB_48 | 147511 | 148374 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HJDCBENB_48 | 149617 | 150417 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJDCBENB_48 | 147511 | 148371 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| HJDCBENB_48 | 149620 | 150417 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HJDCBENB_1 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_2 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_3 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_4 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_5 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_6 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_7 | 1.0 | 0.0 | 1.0 |
| HJDCBENB_8 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_9 | 1.0 | 0.0 | 1.0 |
| HJDCBENB_10 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_11 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_12 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_13 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_14 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_15 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_16 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_17 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_18 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_19 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_20 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_21 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_22 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_23 | 1.0 | 0.0 | 1.0 |
| HJDCBENB_24 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_25 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_26 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_27 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_28 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_29 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_30 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_31 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_32 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_33 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_34 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_35 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_36 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_37 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_38 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_39 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_40 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_41 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_42 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_43 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_44 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_45 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_46 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_47 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_48 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_49 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_50 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_51 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_52 | 1.0 | 0.0 | 1.0 |
| HJDCBENB_53 | 1.0 | 0.0 | 1.0 |
| HJDCBENB_54 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_55 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_56 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_57 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_58 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_59 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_60 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_61 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_62 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_63 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_64 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_65 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_66 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_67 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_68 | 0.0 | 1.0 | 0.0 |
| HJDCBENB_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HJDCBENB_28 | 30664 | 43811 | False | Unknown | VOG4565, |
| HJDCBENB_36 | 178769 | 186954 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)