Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GKELDEED_27 | 70336 | 71916 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GKELDEED_1 | 1.0 | 0.0 | 1.0 |
| GKELDEED_2 | 0.0 | 1.0 | 0.0 |
| GKELDEED_3 | 0.0 | 1.0 | 0.0 |
| GKELDEED_4 | 1.0 | 0.0 | 1.0 |
| GKELDEED_5 | 0.0 | 1.0 | 0.0 |
| GKELDEED_6 | 0.0 | 1.0 | 0.0 |
| GKELDEED_7 | 0.0 | 1.0 | 0.0 |
| GKELDEED_8 | 0.0 | 1.0 | 0.0 |
| GKELDEED_9 | 0.0 | 1.0 | 0.0 |
| GKELDEED_10 | 1.0 | 0.0 | 1.0 |
| GKELDEED_11 | 0.0 | 1.0 | 0.0 |
| GKELDEED_12 | 0.0 | 1.0 | 0.0 |
| GKELDEED_13 | 0.0 | 1.0 | 0.0 |
| GKELDEED_14 | 0.0 | 1.0 | 0.0 |
| GKELDEED_15 | 0.0 | 1.0 | 0.0 |
| GKELDEED_16 | 1.0 | 0.0 | 1.0 |
| GKELDEED_17 | 0.0 | 1.0 | 0.0 |
| GKELDEED_18 | 0.0 | 1.0 | 0.0 |
| GKELDEED_19 | 0.0 | 1.0 | 0.0 |
| GKELDEED_20 | 0.0 | 1.0 | 0.0 |
| GKELDEED_21 | 1.0 | 0.0 | 1.0 |
| GKELDEED_22 | 1.0 | 0.0 | 1.0 |
| GKELDEED_23 | 0.0 | 1.0 | 0.0 |
| GKELDEED_24 | 0.0 | 1.0 | 0.0 |
| GKELDEED_25 | 0.0 | 1.0 | 0.0 |
| GKELDEED_26 | 0.0 | 1.0 | 0.0 |
| GKELDEED_27 | 0.0 | 1.0 | 0.0 |
| GKELDEED_28 | 0.0 | 1.0 | 0.0 |
| GKELDEED_29 | 0.0 | 1.0 | 0.0 |
| GKELDEED_30 | 0.0 | 1.0 | 0.0 |
| GKELDEED_31 | 0.0 | 1.0 | 0.0 |
| GKELDEED_32 | 0.0 | 1.0 | 0.0 |
| GKELDEED_33 | 0.0 | 1.0 | 0.0 |
| GKELDEED_34 | 0.0 | 1.0 | 0.0 |
| GKELDEED_35 | 0.0 | 1.0 | 0.0 |
| GKELDEED_36 | 0.0 | 1.0 | 0.0 |
| GKELDEED_37 | 0.0 | 1.0 | 0.0 |
| GKELDEED_38 | 0.0 | 1.0 | 0.0 |
| GKELDEED_39 | 0.0 | 1.0 | 0.0 |
| GKELDEED_40 | 0.0 | 1.0 | 0.0 |
| GKELDEED_41 | 0.0 | 1.0 | 0.0 |
| GKELDEED_42 | 0.0 | 1.0 | 0.0 |
| GKELDEED_43 | 0.0 | 1.0 | 0.0 |
| GKELDEED_44 | 0.0 | 1.0 | 0.0 |
| GKELDEED_45 | 0.0 | 1.0 | 0.0 |
| GKELDEED_46 | 1.0 | 0.0 | 1.0 |
| GKELDEED_47 | 0.0 | 1.0 | 0.0 |
| GKELDEED_48 | 0.0 | 1.0 | 0.0 |
| GKELDEED_49 | 0.0 | 1.0 | 0.0 |
| GKELDEED_50 | 0.0 | 1.0 | 0.0 |
| GKELDEED_51 | 0.0 | 1.0 | 0.0 |
| GKELDEED_52 | 1.0 | 0.0 | 1.0 |
| GKELDEED_53 | 0.0 | 1.0 | 0.0 |
| GKELDEED_54 | 0.0 | 1.0 | 0.0 |
| GKELDEED_55 | 0.0 | 1.0 | 0.0 |
| GKELDEED_56 | 1.0 | 0.0 | 1.0 |
| GKELDEED_57 | 0.0 | 1.0 | 0.0 |
| GKELDEED_58 | 0.0 | 1.0 | 0.0 |
| GKELDEED_59 | 0.0 | 1.0 | 0.0 |
| GKELDEED_60 | 1.0 | 0.0 | 1.0 |
| GKELDEED_61 | 0.0 | 1.0 | 0.0 |
| GKELDEED_62 | 0.0 | 1.0 | 0.0 |
| GKELDEED_63 | 0.0 | 1.0 | 0.0 |
| GKELDEED_64 | 0.0 | 1.0 | 0.0 |
| GKELDEED_65 | 0.0 | 1.0 | 0.0 |
| GKELDEED_66 | 0.0 | 1.0 | 0.0 |
| GKELDEED_67 | 0.0 | 1.0 | 0.0 |
| GKELDEED_68 | 0.0 | 1.0 | 0.0 |
| GKELDEED_69 | 0.0 | 1.0 | 0.0 |
| GKELDEED_70 | 1.0 | 0.0 | 1.0 |
| GKELDEED_71 | 0.0 | 1.0 | 0.0 |
| GKELDEED_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GKELDEED_2 | 177306 | 185989 | False | Unknown | VOG0327, |
| GKELDEED_13 | 101741 | 113634 | False | Unknown | VOG0298, |
| GKELDEED_44 | 73439 | 83454 | False | Siphoviridae | VOG4565, |
Phigaro v2.4.0 (Database: Jan. 2024 release)