Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 0 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPGNIAID_3 | 105383 | 107329 | tet(Q) | ARO:3000191 | tet(Q) | 97.81 | 98.63 | Z21523.1 |
| IPGNIAID_80 | 13276 | 14178 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IPGNIAID_80 | 13276 | 14178 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | L13472 |
| IPGNIAID_3 | 105383 | 107295 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.75 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPGNIAID_80 | 13279 | 14178 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| IPGNIAID_3 | 105383 | 107296 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.96 | 99.53 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| IPGNIAID_40 | 8928 | 10121 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| IPGNIAID_40 | 8928 | 10121 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| IPGNIAID_40 | 8928 | 10121 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IPGNIAID_1 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_2 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_3 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_4 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_5 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_6 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_7 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_8 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_9 | 1.0 | 0.0 | 1.0 |
| IPGNIAID_10 | 1.0 | 0.0 | 1.0 |
| IPGNIAID_11 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_12 | 1.0 | 0.0 | 1.0 |
| IPGNIAID_13 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_14 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_15 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_16 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_17 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_18 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_19 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_20 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_21 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_22 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_23 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_24 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_25 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_26 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_27 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_28 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_29 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_30 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_31 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_32 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_33 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_34 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_35 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_36 | 1.0 | 0.0 | 1.0 |
| IPGNIAID_37 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_38 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_39 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_40 | 1.0 | 0.0 | 1.0 |
| IPGNIAID_41 | 1.0 | 0.0 | 1.0 |
| IPGNIAID_42 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_43 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_44 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_45 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_46 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_47 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_48 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_49 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_50 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_51 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_52 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_53 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_54 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_55 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_56 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_57 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_58 | 1.0 | 0.0 | 1.0 |
| IPGNIAID_59 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_60 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_61 | 1.0 | 0.0 | 1.0 |
| IPGNIAID_62 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_63 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_64 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_65 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_66 | 1.0 | 0.0 | 1.0 |
| IPGNIAID_67 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_68 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_69 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_70 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_71 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_72 | 1.0 | 0.0 | 1.0 |
| IPGNIAID_73 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_74 | 1.0 | 0.0 | 1.0 |
| IPGNIAID_75 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_76 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_77 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_78 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_79 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_80 | 0.0 | 1.0 | 0.0 |
| IPGNIAID_81 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IPGNIAID_19 | 7770 | 16158 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)