Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 1 | 0 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHICBGCI_26 | 128982 | 129884 | CepA-44 | ARO:3006225 | CepA-44 | 99.67 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NHICBGCI_26 | 128982 | 129884 | cepA-44 | Unknown Beta-lactam | 99.89 | 100.00 | U05885 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NHICBGCI_26 | 128982 | 129881 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_032579291.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NHICBGCI_2 | 153195 | 154387 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 99.92 | 99.92 | BAA77276 |
| NHICBGCI_2 | 153195 | 154387 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 99.92 | BAA77277 |
| NHICBGCI_2 | 153195 | 154387 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 99.92 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NHICBGCI_1 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_2 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_3 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_4 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_5 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_6 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_7 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_8 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_9 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_10 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_11 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_12 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_13 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_14 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_15 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_16 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_17 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_18 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_19 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_20 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_21 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_22 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_23 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_24 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_25 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_26 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_27 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_28 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_29 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_30 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_31 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_32 | 0.0 | 1.0 | 0.0 |
| NHICBGCI_33 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)