Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCPOKNDE_22 | 45417 | 46217 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| NCPOKNDE_11 | 21247 | 22149 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NCPOKNDE_22 | 45417 | 46217 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| NCPOKNDE_11 | 21247 | 22149 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | L13472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCPOKNDE_11 | 21250 | 22149 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| NCPOKNDE_22 | 45417 | 46214 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NCPOKNDE_1 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_2 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_3 | 1.0 | 0.0 | 1.0 |
| NCPOKNDE_4 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_5 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_6 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_8 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_9 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_10 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_11 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_12 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_13 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_14 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_15 | 1.0 | 0.0 | 1.0 |
| NCPOKNDE_16 | 1.0 | 0.0 | 1.0 |
| NCPOKNDE_17 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_18 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_19 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_20 | 1.0 | 0.0 | 1.0 |
| NCPOKNDE_21 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_22 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_23 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_24 | 1.0 | 0.0 | 1.0 |
| NCPOKNDE_25 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_26 | 1.0 | 0.0 | 1.0 |
| NCPOKNDE_27 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_28 | 1.0 | 0.0 | 1.0 |
| NCPOKNDE_29 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_30 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_31 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_32 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_33 | 0.0 | 1.0 | 0.0 |
| NCPOKNDE_34 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NCPOKNDE_30 | 222710 | 231782 | False | Siphoviridae | VOG4841, |
Phigaro v2.4.0 (Database: Jan. 2024 release)