Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| APOEIGEJ_16 | 192200 | 194125 | tet(Q) | ARO:3000191 | tet(Q) | 98.13 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| APOEIGEJ_16 | 192200 | 194125 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.65 | 100.00 | L33696 |
| APOEIGEJ_16 | 195603 | 196820 | mef(A) | Erythromycin, Azithromycin | 95.24 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| APOEIGEJ_16 | 195600 | 196820 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.77 | 99.75 | WP_012102963.1 |
| APOEIGEJ_16 | 192203 | 194125 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.13 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| APOEIGEJ_47 | 34265 | 32685 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| APOEIGEJ_1 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_2 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_3 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_4 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_5 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_6 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_7 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_8 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_9 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_10 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_11 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_12 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_13 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_14 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_15 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_16 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_17 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_18 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_19 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_20 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_21 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_22 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_23 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_24 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_25 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_26 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_27 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_28 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_29 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_30 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_31 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_32 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_33 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_34 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_35 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_36 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_37 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_38 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_39 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_40 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_41 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_42 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_43 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_44 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_45 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_46 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_47 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_48 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_49 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_50 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_51 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_52 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_53 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_54 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_56 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_57 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_58 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_59 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_60 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_61 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_62 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_63 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_64 | 1.0 | 0.0 | 1.0 |
| APOEIGEJ_65 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_66 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_67 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_68 | 0.0 | 1.0 | 0.0 |
| APOEIGEJ_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| APOEIGEJ_15 | 60763 | 69817 | False | Siphoviridae | VOG2154, |
Phigaro v2.4.0 (Database: Jan. 2024 release)