Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PADIJCGC_20 | 223069 | 224274 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PADIJCGC_91 | 492 | 1709 | mef(A) | Erythromycin, Azithromycin | 96.22 | 100.00 | U83667 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PADIJCGC_20 | 222535 | 223044 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| PADIJCGC_20 | 223072 | 224274 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| PADIJCGC_91 | 495 | 1709 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.27 | 100.00 | WP_024127829.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PADIJCGC_68 | 11354 | 12934 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PADIJCGC_1 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_2 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_3 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_4 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_5 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_6 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_7 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_8 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_9 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_10 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_11 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_12 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_13 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_14 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_15 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_16 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_17 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_19 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_20 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_21 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_22 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_23 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_24 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_25 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_26 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_27 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_28 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_29 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_30 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_31 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_32 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_33 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_34 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_35 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_36 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_37 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_38 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_39 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_40 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_41 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_42 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_43 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_44 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_45 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_46 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_47 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_48 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_49 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_50 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_51 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_52 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_53 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_54 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_55 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_56 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_57 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_58 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_59 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_60 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_61 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_62 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_63 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_64 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_65 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_66 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_67 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_68 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_69 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_70 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_71 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_72 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_73 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_74 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_75 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_76 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_77 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_78 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_79 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_80 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_81 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_82 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_83 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_84 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_85 | 1.0 | 0.0 | 1.0 |
| PADIJCGC_86 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_87 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_88 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_89 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_90 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_91 | 0.0 | 1.0 | 0.0 |
| PADIJCGC_92 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PADIJCGC_63 | 6786 | 16537 | True | Unknown | VOG8253, |
Phigaro v2.4.0 (Database: Jan. 2024 release)