Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IFBMDCPI_42 | 189971 | 190936 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| IFBMDCPI_23 | 29843 | 31768 | tet(Q) | ARO:3000191 | tet(Q) | 98.75 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IFBMDCPI_42 | 189971 | 190936 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| IFBMDCPI_23 | 29843 | 31768 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.96 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IFBMDCPI_42 | 189974 | 190936 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| IFBMDCPI_23 | 29843 | 31765 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IFBMDCPI_28 | 118950 | 120530 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IFBMDCPI_1 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_2 | 1.0 | 0.0 | 1.0 |
| IFBMDCPI_3 | 1.0 | 0.0 | 1.0 |
| IFBMDCPI_4 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_5 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_6 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_7 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_8 | 1.0 | 0.0 | 1.0 |
| IFBMDCPI_9 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_10 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_11 | 1.0 | 0.0 | 1.0 |
| IFBMDCPI_12 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_13 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_14 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_15 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_16 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_17 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_18 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_19 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_20 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_21 | 1.0 | 0.0 | 1.0 |
| IFBMDCPI_22 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_23 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_24 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_25 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_26 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_27 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_28 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_29 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_31 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_32 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_33 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_34 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_35 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_36 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_37 | 1.0 | 0.0 | 1.0 |
| IFBMDCPI_38 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_39 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_40 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_41 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_42 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_43 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_44 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_45 | 0.0 | 1.0 | 0.0 |
| IFBMDCPI_46 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IFBMDCPI_43 | 83002 | 92742 | False | Unknown | VOG0298, |
Phigaro v2.4.0 (Database: Jan. 2024 release)