Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKIHMBBI_26 | 79603 | 80505 | cepA | ARO:3003559 | cepA | 99.33 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PKIHMBBI_26 | 79603 | 80505 | cepA-29 | Unknown Beta-lactam | 99.56 | 100.00 | U05884 |
| PKIHMBBI_26 | 79603 | 80505 | cepA | Unknown Beta-lactam | 99.56 | 100.00 | FR688022 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKIHMBBI_26 | 79606 | 80505 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005816369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKIHMBBI_1 | 1.0 | 0.0 | 1.0 |
| PKIHMBBI_2 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_3 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_4 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_5 | 1.0 | 0.0 | 1.0 |
| PKIHMBBI_6 | 1.0 | 0.0 | 1.0 |
| PKIHMBBI_7 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_8 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_9 | 1.0 | 0.0 | 1.0 |
| PKIHMBBI_10 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_11 | 1.0 | 0.0 | 1.0 |
| PKIHMBBI_12 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_13 | 1.0 | 0.0 | 1.0 |
| PKIHMBBI_14 | 1.0 | 0.0 | 1.0 |
| PKIHMBBI_15 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_17 | 1.0 | 0.0 | 1.0 |
| PKIHMBBI_18 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_19 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_20 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_21 | 1.0 | 0.0 | 1.0 |
| PKIHMBBI_22 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_23 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_24 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_25 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_26 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_27 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_28 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_29 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_30 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_31 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_32 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_33 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_34 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_35 | 1.0 | 0.0 | 1.0 |
| PKIHMBBI_36 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_37 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_38 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_39 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_40 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_41 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_42 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_43 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_44 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_45 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_47 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_48 | 0.0 | 1.0 | 0.0 |
| PKIHMBBI_49 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PKIHMBBI_2 | 333914 | 339502 | True | Unknown | VOG0189, |
Phigaro v2.4.0 (Database: Jan. 2024 release)