Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JDBHIPML_11 | 14781 | 16231 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 94.69 | 99.11 | AF274302 |
| JDBHIPML_11 | 16352 | 17569 | mef(A) | Erythromycin, Azithromycin | 94.42 | 100.00 | AJ971089 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JDBHIPML_11 | 16355 | 17569 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 95.80 | 100.00 | WP_063853689.1 |
| JDBHIPML_11 | 14777 | 16231 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 94.43 | 99.59 | WP_000420313.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JDBHIPML_33 | 50426 | 48846 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JDBHIPML_1 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_2 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_3 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_4 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_5 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_6 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_7 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_8 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_9 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_10 | 1.0 | 0.0 | 1.0 |
| JDBHIPML_11 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_12 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_13 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_14 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_15 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_16 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_17 | 1.0 | 0.0 | 1.0 |
| JDBHIPML_18 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_19 | 1.0 | 0.0 | 1.0 |
| JDBHIPML_20 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_21 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_22 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_23 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_24 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_25 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_26 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_27 | 1.0 | 0.0 | 1.0 |
| JDBHIPML_28 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_29 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_30 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_31 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_32 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_33 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_34 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_35 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_36 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_37 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_38 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_39 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_40 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_41 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_42 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_43 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_44 | 0.0 | 1.0 | 0.0 |
| JDBHIPML_45 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JDBHIPML_11 | 47479 | 61044 | False | Unknown | VOG6183, |
Phigaro v2.4.0 (Database: Jan. 2024 release)