Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJGPKPFL_24 | 346995 | 348200 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| GJGPKPFL_24 | 325042 | 325944 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GJGPKPFL_24 | 325042 | 325944 | cepA | Unknown Beta-lactam | 100.00 | 100.00 | FR688022 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJGPKPFL_24 | 325045 | 325944 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| GJGPKPFL_24 | 348225 | 348734 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GJGPKPFL_24 | 346995 | 348197 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GJGPKPFL_1 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_2 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_3 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_4 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_5 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_6 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_7 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_9 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_10 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_11 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_12 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_13 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_14 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_15 | 1.0 | 0.0 | 1.0 |
| GJGPKPFL_16 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_17 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_18 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_19 | 1.0 | 0.0 | 1.0 |
| GJGPKPFL_20 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_21 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_22 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_23 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_24 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_25 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_26 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_27 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_29 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_30 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_31 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_32 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_33 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_34 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_35 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_36 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_37 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_38 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_39 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_40 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_41 | 1.0 | 0.0 | 1.0 |
| GJGPKPFL_42 | 0.0 | 1.0 | 0.0 |
| GJGPKPFL_43 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GJGPKPFL_12 | 35564 | 40510 | False | Unknown | VOG4548, |
| GJGPKPFL_32 | 6865 | 14924 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)