Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GELLCAMB_23 | 287576 | 288439 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| GELLCAMB_23 | 286264 | 287400 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| GELLCAMB_23 | 284926 | 286065 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| GELLCAMB_18 | 62883 | 63785 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
| GELLCAMB_10 | 20554 | 21759 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GELLCAMB_18 | 62883 | 63785 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
| GELLCAMB_23 | 286234 | 287400 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GELLCAMB_23 | 287576 | 288436 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| GELLCAMB_18 | 62883 | 63782 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| GELLCAMB_10 | 21784 | 22293 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| GELLCAMB_23 | 286234 | 287397 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| GELLCAMB_23 | 284926 | 286062 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| GELLCAMB_10 | 20554 | 21756 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GELLCAMB_1 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_3 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_4 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_6 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_7 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_8 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_9 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_10 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_11 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_12 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_13 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_14 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_15 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_16 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_17 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_18 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_19 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_20 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_21 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_22 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_23 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_24 | 1.0 | 0.0 | 1.0 |
| GELLCAMB_25 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_26 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_27 | 0.0 | 1.0 | 0.0 |
| GELLCAMB_28 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GELLCAMB_9 | 178991 | 184866 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)