Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMIFHCIH_23 | 275633 | 277558 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| CMIFHCIH_61 | 1378 | 2343 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMIFHCIH_61 | 1378 | 2343 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| CMIFHCIH_23 | 275633 | 277558 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMIFHCIH_61 | 1378 | 2340 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| CMIFHCIH_23 | 275636 | 277558 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMIFHCIH_1 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_2 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_3 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_4 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_5 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_6 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_7 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_8 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_9 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_10 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_12 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_13 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_14 | 1.0 | 0.0 | 1.0 |
| CMIFHCIH_15 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_16 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_17 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_18 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_19 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_20 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_21 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_22 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_23 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_24 | 1.0 | 0.0 | 1.0 |
| CMIFHCIH_25 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_26 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_27 | 1.0 | 0.0 | 1.0 |
| CMIFHCIH_28 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_29 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_30 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_31 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_32 | 1.0 | 0.0 | 1.0 |
| CMIFHCIH_33 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_34 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_35 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_36 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_37 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_38 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_39 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_40 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_41 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_42 | 1.0 | 0.0 | 1.0 |
| CMIFHCIH_43 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_44 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_45 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_46 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_47 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_48 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_49 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_50 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_51 | 1.0 | 0.0 | 1.0 |
| CMIFHCIH_52 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_53 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_54 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_55 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_56 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_57 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_58 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_59 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_60 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_61 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_62 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_63 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_64 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_65 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_66 | 1.0 | 0.0 | 1.0 |
| CMIFHCIH_67 | 0.0 | 1.0 | 0.0 |
| CMIFHCIH_68 | 1.0 | 0.0 | 1.0 |
| CMIFHCIH_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)