Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IOCIKAAM_33 | 91467 | 92432 | CfxA4 | ARO:3003005 | CfxA4 | 99.38 | 100.00 | AY769933.1 |
| IOCIKAAM_30 | 76138 | 76803 | ErmB | ARO:3000375 | ErmB | 97.74 | 89.11 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IOCIKAAM_30 | 79142 | 80008 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| IOCIKAAM_33 | 91467 | 92432 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| IOCIKAAM_30 | 76065 | 76803 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IOCIKAAM_30 | 79142 | 80005 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| IOCIKAAM_30 | 76072 | 76800 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 99.18 | WP_002292226.1 |
| IOCIKAAM_33 | 91467 | 92429 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IOCIKAAM_42 | 128082 | 129662 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IOCIKAAM_1 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_2 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_3 | 1.0 | 0.0 | 1.0 |
| IOCIKAAM_5 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_6 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_7 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_8 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_9 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_10 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_11 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_13 | 1.0 | 0.0 | 1.0 |
| IOCIKAAM_14 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_15 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_16 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_17 | 1.0 | 0.0 | 1.0 |
| IOCIKAAM_18 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_19 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_20 | 1.0 | 0.0 | 1.0 |
| IOCIKAAM_21 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_22 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_23 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_24 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_25 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_26 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_27 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_28 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_29 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_30 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_31 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_32 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_33 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_34 | 1.0 | 0.0 | 1.0 |
| IOCIKAAM_35 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_36 | 1.0 | 0.0 | 1.0 |
| IOCIKAAM_37 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_38 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_39 | 1.0 | 0.0 | 1.0 |
| IOCIKAAM_40 | 1.0 | 0.0 | 1.0 |
| IOCIKAAM_41 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_42 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_43 | 0.0 | 1.0 | 0.0 |
| IOCIKAAM_44 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IOCIKAAM_27 | 112414 | 127128 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)