Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMMBOFMP_12 | 224941 | 225736 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 98.86 | CP004067.1 |
| CMMBOFMP_12 | 223518 | 224279 | ErmB | ARO:3000375 | ErmB | 97.95 | 102.02 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMMBOFMP_12 | 227219 | 228085 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| CMMBOFMP_12 | 224941 | 225735 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
| CMMBOFMP_12 | 223551 | 224279 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 98.78 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMMBOFMP_12 | 218946 | 219719 | aad9 | ANT(9) family aminoglycoside nucleotidyltransferase | EXACTX | 100.00 | 100.00 | WP_002578722.1 |
| CMMBOFMP_12 | 227219 | 228082 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| CMMBOFMP_12 | 224941 | 225732 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| CMMBOFMP_42 | 21799 | 22704 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| CMMBOFMP_12 | 223545 | 224276 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 99.59 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CMMBOFMP_21 | 85598 | 87178 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMMBOFMP_1 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_2 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_3 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_4 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_5 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_6 | 1.0 | 0.0 | 1.0 |
| CMMBOFMP_7 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_8 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_9 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_10 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_11 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_12 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_13 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_14 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_15 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_16 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_17 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_18 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_19 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_20 | 1.0 | 0.0 | 1.0 |
| CMMBOFMP_21 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_22 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_23 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_24 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_25 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_26 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_27 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_28 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_29 | 1.0 | 0.0 | 1.0 |
| CMMBOFMP_30 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_31 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_32 | 1.0 | 0.0 | 1.0 |
| CMMBOFMP_33 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_34 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_35 | 1.0 | 0.0 | 1.0 |
| CMMBOFMP_36 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_37 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_38 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_39 | 1.0 | 0.0 | 1.0 |
| CMMBOFMP_40 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_41 | 1.0 | 0.0 | 1.0 |
| CMMBOFMP_42 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_43 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_45 | 0.0 | 1.0 | 0.0 |
| CMMBOFMP_46 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)