Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 1 | 4.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MKNPMADF_1 | 3686091 | 3686936 | Erm(34) | ARO:3000600 | Erm(34) | 100.00 | 100.00 | AY234334.1 |
| MKNPMADF_1 | 1150031 | 1151083 | clbC | ARO:3002816 | clbC | 97.14 | 100.00 | AP006627.1 |
| MKNPMADF_1 | 238158 | 238928 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MKNPMADF_1 | 3686091 | 3686936 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | AY234334 |
| MKNPMADF_1 | 238158 | 238928 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.16 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MKNPMADF_1 | 3686094 | 3686936 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | EXACTX | 100.00 | 100.00 | WP_063844504.1 |
| MKNPMADF_1 | 1150031 | 1151080 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| MKNPMADF_1 | 234842 | 235744 | blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| MKNPMADF_1 | 238161 | 238928 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MKNPMADF_1 | 2686266 | 2686916 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.23 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MKNPMADF_1 | 128508 | 129650 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MKNPMADF_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MKNPMADF_1 | 2569721 | 2607482 | False | Siphoviridae | VOG4606, VOG1936, VOG0535, VOG6931, VOG6414, VOG0468, VOG4552, VOG5353, VOG8520, VOG4602, VOG0047, VOG0866, VOG6116, VOG0018, VOG8236, VOG0641, VOG4619, VOG4705, VOG3390, VOG5384, VOG4660, VOG0801, VOG4910, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG7168, VOG4553, VOG4568, VOG4556, VOG3607, VOG3920, VOG4581, VOG4841, VOG10137 |
Phigaro v2.4.0 (Database: Jan. 2024 release)