Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PFEMEMEF_1 | 347031 | 347735 | WalR | 4.42e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PFEMEMEF_2 | 233798 | 233604 | CspR | 2.80e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PFEMEMEF_2 | 233798 | 233601 | CspA | 4.30e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PFEMEMEF_1 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_2 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_3 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_4 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_5 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_6 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_7 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_8 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_9 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_10 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_11 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_12 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_13 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_14 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_15 | 1.0 | 0.0 | 1.0 |
| PFEMEMEF_16 | 1.0 | 0.0 | 1.0 |
| PFEMEMEF_17 | 1.0 | 0.0 | 1.0 |
| PFEMEMEF_18 | 1.0 | 0.0 | 1.0 |
| PFEMEMEF_19 | 1.0 | 0.0 | 1.0 |
| PFEMEMEF_20 | 1.0 | 0.0 | 1.0 |
| PFEMEMEF_21 | 1.0 | 0.0 | 1.0 |
| PFEMEMEF_23 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_24 | 1.0 | 0.0 | 1.0 |
| PFEMEMEF_25 | 1.0 | 0.0 | 1.0 |
| PFEMEMEF_26 | 1.0 | 0.0 | 1.0 |
| PFEMEMEF_28 | 0.0 | 1.0 | 0.0 |
| PFEMEMEF_29 | 1.0 | 0.0 | 1.0 |
| PFEMEMEF_30 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PFEMEMEF_2 | 138368 | 164085 | False | Siphoviridae | VOG8294, VOG6540, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG3772, VOG4711, VOG9317, VOG0692, VOG0691, VOG0611, VOG0045, VOG0198, VOG1049, VOG3307 |
| PFEMEMEF_2 | 572338 | 594809 | False | Siphoviridae | VOG0602, VOG1637, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| PFEMEMEF_2 | 596390 | 603791 | False | Siphoviridae | VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG6394, VOG4548, VOG0321, VOG6495 |
| PFEMEMEF_3 | 1378 | 24078 | False | Siphoviridae | VOG2124, VOG3699, VOG10227, VOG0720, VOG4564, VOG10914, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG4918, VOG0753, VOG0054 |
| PFEMEMEF_7 | 13413 | 37953 | False | Siphoviridae | VOG4693, VOG0198, VOG1315, VOG0796, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4910, VOG0801, VOG4619, VOG3463, VOG8294, VOG1637 |
| PFEMEMEF_8 | 26496 | 28726 | False | Unknown | VOG2154, VOG0275 |
| PFEMEMEF_9 | 4539 | 7025 | False | Siphoviridae | VOG1250, VOG9667, VOG6495 |
Phigaro v2.4.0 (Database: Jan. 2024 release)