Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DNEEKHGI_15 | 16881 | 17585 | WalR | 7.88e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| DNEEKHGI_29 | 14614 | 14417 | CspR | 2.78e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DNEEKHGI_72 | 186 | 684 | repUS54 | 500 / 690 | 85.00 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DNEEKHGI_1 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_2 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_3 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_4 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_5 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_6 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_7 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_8 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_9 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_10 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_11 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_12 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_13 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_14 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_15 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_16 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_17 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_18 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_19 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_20 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_21 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_22 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_23 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_24 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_25 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_26 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_27 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_28 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_29 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_30 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_31 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_32 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_33 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_34 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_35 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_36 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_37 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_38 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_39 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_40 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_41 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_42 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_43 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_44 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_45 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_46 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_47 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_48 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_49 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_50 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_51 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_52 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_53 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_54 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_55 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_56 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_57 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_58 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_59 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_61 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_62 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_63 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_64 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_65 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_66 | 0.0 | 1.0 | 0.0 |
| DNEEKHGI_67 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_68 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_69 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_70 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_71 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_72 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_73 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_75 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_76 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_77 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_78 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_79 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_80 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_81 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_82 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_83 | 1.0 | 0.0 | 1.0 |
| DNEEKHGI_84 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DNEEKHGI_7 | 92904 | 127313 | False | Siphoviridae | VOG4605, VOG4918, VOG0703, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG3699, VOG4570, VOG0198, VOG3643, VOG0152, VOG9741, VOG0536, VOG9860, VOG11003, VOG8987, VOG1638, VOG6238, VOG4566, VOG0186, VOG1309 |
| DNEEKHGI_20 | 44904 | 52900 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051 |
Phigaro v2.4.0 (Database: Jan. 2024 release)