Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
HKLHMGCA_24136328137032WalR1.99e-114transcriptional regulatory protein84.25100.00EPH95667
HKLHMGCA_968584285648CspR5.34e-30cold shock protein84.6198.48AAO82613
HKLHMGCA_968584285645CspA8.19e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
HKLHMGCA_3878768976repUS731102 / 110194.74CP002654
HKLHMGCA_661371072rep28937 / 93681.43CP005948

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
HKLHMGCA_10.01.00.0
HKLHMGCA_20.01.00.0
HKLHMGCA_130.01.00.0
HKLHMGCA_160.01.00.0
HKLHMGCA_170.01.00.0
HKLHMGCA_180.01.00.0
HKLHMGCA_190.01.00.0
HKLHMGCA_200.01.00.0
HKLHMGCA_210.01.00.0
HKLHMGCA_220.01.00.0
HKLHMGCA_230.01.00.0
HKLHMGCA_240.01.00.0
HKLHMGCA_250.01.00.0
HKLHMGCA_260.01.00.0
HKLHMGCA_271.00.01.0
HKLHMGCA_280.01.00.0
HKLHMGCA_290.01.00.0
HKLHMGCA_301.00.01.0
HKLHMGCA_311.00.01.0
HKLHMGCA_321.00.01.0
HKLHMGCA_330.01.00.0
HKLHMGCA_340.01.00.0
HKLHMGCA_350.01.00.0
HKLHMGCA_360.01.00.0
HKLHMGCA_370.01.00.0
HKLHMGCA_381.00.01.0
HKLHMGCA_390.01.00.0
HKLHMGCA_400.01.00.0
HKLHMGCA_410.01.00.0
HKLHMGCA_421.00.01.0
HKLHMGCA_430.01.00.0
HKLHMGCA_440.01.00.0
HKLHMGCA_451.00.01.0
HKLHMGCA_460.01.00.0
HKLHMGCA_470.01.00.0
HKLHMGCA_481.00.01.0
HKLHMGCA_490.01.00.0
HKLHMGCA_500.01.00.0
HKLHMGCA_511.00.01.0
HKLHMGCA_520.01.00.0
HKLHMGCA_530.01.00.0
HKLHMGCA_540.01.00.0
HKLHMGCA_551.00.01.0
HKLHMGCA_561.00.01.0
HKLHMGCA_570.01.00.0
HKLHMGCA_580.01.00.0
HKLHMGCA_590.01.00.0
HKLHMGCA_601.00.01.0
HKLHMGCA_610.01.00.0
HKLHMGCA_621.00.01.0
HKLHMGCA_631.00.01.0
HKLHMGCA_641.00.01.0
HKLHMGCA_651.00.01.0
HKLHMGCA_661.00.01.0
HKLHMGCA_671.00.01.0
HKLHMGCA_680.01.00.0
HKLHMGCA_690.01.00.0
HKLHMGCA_700.01.00.0
HKLHMGCA_711.00.01.0
HKLHMGCA_721.00.01.0
HKLHMGCA_731.00.01.0
HKLHMGCA_741.00.01.0
HKLHMGCA_751.00.01.0
HKLHMGCA_771.00.01.0
HKLHMGCA_780.01.00.0
HKLHMGCA_790.01.00.0
HKLHMGCA_801.00.01.0
HKLHMGCA_811.00.01.0
HKLHMGCA_821.00.01.0
HKLHMGCA_831.00.01.0
HKLHMGCA_841.00.01.0
HKLHMGCA_850.01.00.0
HKLHMGCA_861.00.01.0
HKLHMGCA_871.00.01.0
HKLHMGCA_880.01.00.0
HKLHMGCA_891.00.01.0
HKLHMGCA_900.01.00.0
HKLHMGCA_921.00.01.0
HKLHMGCA_930.01.00.0
HKLHMGCA_941.00.01.0
HKLHMGCA_951.00.01.0
HKLHMGCA_960.01.00.0
HKLHMGCA_981.00.01.0
HKLHMGCA_991.00.01.0
HKLHMGCA_1001.00.01.0
HKLHMGCA_1011.00.01.0
HKLHMGCA_1021.00.01.0
HKLHMGCA_1031.00.01.0
HKLHMGCA_1041.00.01.0
HKLHMGCA_1051.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
HKLHMGCA_1150485174855FalseSiphoviridaeVOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870
HKLHMGCA_33285030847FalseSiphoviridaeVOG8925, VOG0321, VOG4548, VOG10904, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG4567, VOG3643, VOG4673, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG4633
HKLHMGCA_46706318017FalseSiphoviridaeVOG2687, VOG4632, VOG4609, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204
HKLHMGCA_884980477690FalseSiphoviridaeVOG4615, VOG5361, VOG4705, VOG0804, VOG9640, VOG4856, VOG4619, VOG4828, VOG4633, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0045, VOG9667, VOG0198, VOG0044, VOG4693, VOG5084

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements