Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 4 | 4.90 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DILIEIMO_1 | 1628771 | 1629820 | clbA | ARO:3002814 | clbA | 99.71 | 100.00 | CP006845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DILIEIMO_1 | 1628771 | 1629806 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.09 | 98.67 | KR610408 |
| DILIEIMO_1 | 3603178 | 3604554 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.86 | 100.00 | X08034 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DILIEIMO_1 | 1628771 | 1629817 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.71 | 100.00 | WP_012116915.1 |
| DILIEIMO_1 | 3603184 | 3604554 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.21 | 99.78 | WP_003242953.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DILIEIMO_1 | 573682 | 574863 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.75 | NP_391471 |
| DILIEIMO_1 | 573218 | 573667 | capC | 3.18e-115 | Capsule | Immune modulation | 83.81 | 99.78 | NP_391470 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DILIEIMO_1 | 1191801 | 1192937 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| DILIEIMO_1 | 1077015 | 1077884 | pdxS | 9.96e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| DILIEIMO_1 | 2694261 | 2695037 | CodY | 4.73e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| DILIEIMO_1 | 203376 | 202504 | lipA (SAUSA300_0829) | 1.29e-161 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DILIEIMO_1 | 0.0 | 1.0 | 0.0 |
| DILIEIMO_2 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DILIEIMO_1 | 9757 | 36588 | False | Siphoviridae | VOG0275, VOG5216, VOG5353, VOG6116, VOG0602, VOG4615, VOG5221, VOG4705, VOG3390, VOG4612, VOG4660, VOG4619, VOG0801, VOG0083, VOG11074, VOG2565, VOG0724, VOG3676, VOG4555, VOG0692, VOG2613, VOG3699, VOG5023, VOG0275 |
| DILIEIMO_1 | 54317 | 69844 | False | Siphoviridae | VOG1093, VOG5522, VOG5543, VOG0422, VOG0982, VOG0676, VOG0026, VOG2920, VOG0102, VOG10937, VOG5753, VOG2278, VOG1563, VOG2786, VOG4551 |
| DILIEIMO_1 | 1662085 | 1666840 | False | Myoviridae | VOG5532, VOG0944, VOG0443, VOG4571 |
| DILIEIMO_1 | 2289204 | 2315430 | False | Myoviridae | VOG9667, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG5660, VOG10055, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG3390, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)