Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HOHILHGE_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HOHILHGE_1 | 6273 | 19284 | False | Myoviridae / Siphoviridae | VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295 |
| HOHILHGE_1 | 291012 | 295336 | True | Unknown | VOG6929, VOG5088, VOG8916 |
| HOHILHGE_1 | 429051 | 436055 | False | Unknown | VOG4573, VOG0198, VOG8353 |
| HOHILHGE_1 | 1281027 | 1301643 | True | Myoviridae | VOG4737, VOG5088, VOG4156, VOG5088, VOG5088, VOG10127, VOG1761, VOG5088, VOG5088, VOG9671, VOG0350, VOG1844, VOG0322, VOG0052, VOG0322 |
| HOHILHGE_1 | 1559620 | 1593823 | True | Siphoviridae | VOG4694, VOG5088, VOG5088, VOG4694, VOG7443, VOG0083, VOG11003, VOG0083, VOG5088, VOG10560, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG9438, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641 |
Phigaro v2.4.0 (Database: Jan. 2024 release)