Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NPMKDELJ_6 | 269586 | 270356 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
| NPMKDELJ_16 | 124915 | 125760 | Erm(34) | ARO:3000600 | Erm(34) | 100.00 | 100.00 | AY234334.1 |
| NPMKDELJ_33 | 48164 | 49216 | clbC | ARO:3002816 | clbC | 97.14 | 100.00 | AP006627.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NPMKDELJ_16 | 124915 | 125760 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | AY234334 |
| NPMKDELJ_6 | 269586 | 270356 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.16 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NPMKDELJ_16 | 124915 | 125757 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | EXACTX | 100.00 | 100.00 | WP_063844504.1 |
| NPMKDELJ_33 | 48164 | 49213 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| NPMKDELJ_6 | 272770 | 273672 | blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| NPMKDELJ_6 | 269586 | 270353 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NPMKDELJ_13 | 57958 | 58608 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.23 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NPMKDELJ_20 | 33248 | 34390 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| NPMKDELJ_8 | 42600 | 42358 | SpoVG | 2.57e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| NPMKDELJ_52 | 1722 | 1919 | CspA | 4.33e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| NPMKDELJ_17 | 85990 | 86178 | CspB | 1.27e-25 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NPMKDELJ_1 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_2 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_3 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_4 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_5 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_6 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_7 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_8 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_9 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_10 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_11 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_13 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_14 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_15 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_16 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_17 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_18 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_19 | 1.0 | 0.0 | 1.0 |
| NPMKDELJ_20 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_23 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_24 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_25 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_26 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_27 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_28 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_29 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_30 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_31 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_32 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_33 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_34 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_35 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_36 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_37 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_38 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_39 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_40 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_41 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_42 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_43 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_44 | 1.0 | 0.0 | 1.0 |
| NPMKDELJ_45 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_46 | 1.0 | 0.0 | 1.0 |
| NPMKDELJ_47 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_48 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_49 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_50 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_52 | 0.0 | 1.0 | 0.0 |
| NPMKDELJ_53 | 1.0 | 0.0 | 1.0 |
| NPMKDELJ_55 | 1.0 | 0.0 | 1.0 |
| NPMKDELJ_56 | 1.0 | 0.0 | 1.0 |
| NPMKDELJ_57 | 1.0 | 0.0 | 1.0 |
| NPMKDELJ_58 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NPMKDELJ_13 | 137392 | 175153 | False | Siphoviridae | VOG10137, VOG4841, VOG4581, VOG3920, VOG3607, VOG4556, VOG4568, VOG4553, VOG7168, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG4910, VOG0801, VOG4660, VOG5384, VOG3390, VOG4705, VOG4619, VOG0641, VOG8236, VOG0018, VOG6116, VOG0866, VOG0047, VOG4602, VOG8520, VOG5353, VOG4552, VOG0468, VOG6414, VOG6931, VOG0535, VOG1936, VOG4606 |
Phigaro v2.4.0 (Database: Jan. 2024 release)