Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 9 | 18.03 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OOGKOMPC_53 | 53454 | 54374 | mphK | ARO:3004541 | mphK | 98.68 | 100.00 | CP010314.1 |
| OOGKOMPC_10 | 41818 | 42411 | tmrB | ARO:3003059 | tmrB | 100.00 | 100.00 | AL009126.3 |
| OOGKOMPC_62 | 28569 | 30212 | vmlR | ARO:3004476 | vmlR | 98.32 | 100.00 | NC_000964.3 |
| OOGKOMPC_33 | 27209 | 29779 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| OOGKOMPC_24 | 25642 | 25959 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| OOGKOMPC_24 | 25304 | 25642 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| OOGKOMPC_57 | 20804 | 21973 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
| OOGKOMPC_85 | 9510 | 10943 | lmrB | ARO:3002813 | lmrB | 99.16 | 100.00 | JYFL01000006.1 |
| OOGKOMPC_72 | 7705 | 8556 | aadK | ARO:3002627 | aadK | 98.24 | 99.65 | AL009126.1 |
| OOGKOMPC_4 | 733 | 1935 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OOGKOMPC_72 | 7705 | 8556 | aadK | Streptomycin | 98.48 | 99.65 | M26879 |
| OOGKOMPC_53 | 53454 | 54374 | mph(K) | Spiramycin, Telithromycin | 98.05 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OOGKOMPC_53 | 53454 | 54362 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.68 | 99.02 | WP_003246254.1 |
| OOGKOMPC_72 | 7708 | 8556 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| OOGKOMPC_62 | 28569 | 30209 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 96.71 | 99.82 | WP_003234144.1 |
| OOGKOMPC_39 | 17344 | 17736 | satA | streptothricin N-acetyltransferase SatA | PARTIALX | 91.60 | 75.72 | WP_003242546.1 |
| OOGKOMPC_41 | 5353 | 7950 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.48 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OOGKOMPC_9 | 809 | 1990 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| OOGKOMPC_55 | 16065 | 16850 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| OOGKOMPC_9 | 2473 | 3615 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| OOGKOMPC_41 | 59037 | 60800 | dep/capD | 0.0 | Capsule | Immune modulation | 98.98 | 100.00 | NP_389723 |
| OOGKOMPC_55 | 19737 | 20675 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.94 | 100.00 | NP_391077 |
| OOGKOMPC_3 | 74827 | 75468 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.91 | 100.00 | NP_390062 |
| OOGKOMPC_9 | 2005 | 2454 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
| OOGKOMPC_55 | 16876 | 18072 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.75 | 100.00 | NP_391079 |
| OOGKOMPC_55 | 20695 | 27831 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.57 | 100.00 | NP_391076 |
| OOGKOMPC_55 | 18090 | 19709 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.28 | 100.00 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OOGKOMPC_12 | 31720 | 32856 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| OOGKOMPC_40 | 11324 | 10455 | pdxS | 1.12e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| OOGKOMPC_1 | 82631 | 81855 | CodY | 1.27e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| OOGKOMPC_34 | 81034 | 81603 | ClpP | 7.57e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| OOGKOMPC_76 | 23354 | 23746 | spxA1 | 4.12e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| OOGKOMPC_76 | 23354 | 23746 | spx | 2.46e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| OOGKOMPC_28 | 27040 | 26798 | SpoVG | 6.47e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| OOGKOMPC_78 | 2040 | 1843 | CspA | 3.37e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| OOGKOMPC_3 | 86699 | 86893 | CspD | 1.01e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| OOGKOMPC_14 | 30005 | 29811 | CspB | 7.27e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OOGKOMPC_1 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_2 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_3 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_4 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_5 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_8 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_9 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_10 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_11 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_12 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_13 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_14 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_15 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_16 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_17 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_18 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_19 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_20 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_21 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_22 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_23 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_24 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_25 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_26 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_27 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_28 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_29 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_30 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_31 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_32 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_33 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_34 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_35 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_36 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_37 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_39 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_40 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_41 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_42 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_43 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_44 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_46 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_47 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_48 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_49 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_50 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_51 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_52 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_53 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_54 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_55 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_56 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_57 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_58 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_60 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_61 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_62 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_63 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_65 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_66 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_67 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_68 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_69 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_70 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_71 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_72 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_73 | 1.0 | 0.0 | 1.0 |
| OOGKOMPC_74 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_75 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_76 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_77 | 1.0 | 0.0 | 1.0 |
| OOGKOMPC_78 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_80 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_81 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_82 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_83 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_84 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_85 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_86 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_87 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_88 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_89 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_90 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_91 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_92 | 1.0 | 0.0 | 1.0 |
| OOGKOMPC_93 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_94 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_95 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_96 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_97 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_98 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_99 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_100 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_101 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_102 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_103 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_104 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_105 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_106 | 1.0 | 0.0 | 1.0 |
| OOGKOMPC_107 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_108 | 1.0 | 0.0 | 1.0 |
| OOGKOMPC_109 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_110 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_112 | 1.0 | 0.0 | 1.0 |
| OOGKOMPC_113 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_114 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_115 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_116 | 1.0 | 0.0 | 1.0 |
| OOGKOMPC_118 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_120 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_121 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_122 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_125 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_126 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_127 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_128 | 0.0 | 1.0 | 0.0 |
| OOGKOMPC_129 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OOGKOMPC_21 | 466 | 32909 | False | Siphoviridae | VOG4619, VOG0801, VOG6163, VOG5910, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5361, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0713, VOG0198, VOG1985, VOG4693, VOG0189, VOG4566, VOG0186, VOG8233, VOG4603, VOG4552, VOG0650, VOG9667, VOG9667, VOG4602, VOG0275 |
| OOGKOMPC_74 | 5031 | 32151 | False | Myoviridae | VOG4602, VOG9667, VOG3490, VOG0189, VOG6875, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)