Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 5 | 6.71 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AMKIGOIH_19 | 47892 | 48938 | clbA | ARO:3002814 | clbA | 92.77 | 99.71 | CP006845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AMKIGOIH_19 | 47895 | 48938 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 99.33 | KR610408 |
| AMKIGOIH_5 | 334382 | 335758 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.36 | 100.00 | X08034 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AMKIGOIH_19 | 47895 | 48938 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.24 | 99.71 | WP_012116915.1 |
| AMKIGOIH_5 | 334382 | 335752 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 87.09 | 99.78 | WP_003242953.1 |
| AMKIGOIH_19 | 50689 | 51207 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| AMKIGOIH_7 | 83467 | 86064 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.06 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| AMKIGOIH_1 | 484435 | 485616 | capB | 0.0 | Capsule | Immune modulation | 82.04 | 99.66 | NP_391471 |
| AMKIGOIH_1 | 485631 | 486080 | capC | 3.85e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AMKIGOIH_12 | 31663 | 32799 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| AMKIGOIH_9 | 12390 | 11521 | pdxS | 6.36e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| AMKIGOIH_3 | 752293 | 753069 | CodY | 7.19e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| AMKIGOIH_3 | 260469 | 260861 | spxA1 | 1.14e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| AMKIGOIH_16 | 2542 | 2348 | CspD | 2.10e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| AMKIGOIH_16 | 2542 | 2345 | CspB | 4.36e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AMKIGOIH_1 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_2 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_3 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_4 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_5 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_6 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_7 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_8 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_9 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_10 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_11 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_12 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_14 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_15 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_16 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_17 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_19 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_20 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_22 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_23 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_24 | 1.0 | 0.0 | 1.0 |
| AMKIGOIH_25 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_29 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_30 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_32 | 0.0 | 1.0 | 0.0 |
| AMKIGOIH_33 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AMKIGOIH_1 | 874453 | 895261 | False | Siphoviridae | VOG0275, VOG5023, VOG3699, VOG2613, VOG0692, VOG9317, VOG4319, VOG0724, VOG11074, VOG6163, VOG0801, VOG4619, VOG4660, VOG4612, VOG3390, VOG4705 |
| AMKIGOIH_1 | 1014035 | 1036035 | False | Siphoviridae | VOG4841, VOG4556, VOG6052, VOG0531, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG5910, VOG6163, VOG0801, VOG4619, VOG4660, VOG4612, VOG3390, VOG4705, VOG0641 |
| AMKIGOIH_3 | 298197 | 302136 | False | Unknown | VOG3304, VOG9576, VOG9667, VOG9667, VOG8241 |
| AMKIGOIH_3 | 302424 | 305715 | False | Unknown | VOG8233, VOG0186, VOG4566 |
| AMKIGOIH_3 | 314828 | 338113 | False | Myoviridae | VOG0796, VOG0720, VOG4555, VOG4572, VOG1643, VOG4564, VOG4623, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG7718, VOG3390, VOG4705, VOG0753, VOG0136 |
| AMKIGOIH_3 | 402075 | 427462 | False | Myoviridae | VOG9667, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG10055, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718 |
| AMKIGOIH_4 | 36114 | 47051 | False | Siphoviridae | VOG0918, VOG4551, VOG0025, VOG7627, VOG0322, VOG6464, VOG0156 |
| AMKIGOIH_4 | 110377 | 127230 | False | Unknown | VOG5008, VOG8610, VOG7930, VOG0275, VOG2091, VOG2090, VOG9312, VOG4910, VOG3389 |
Phigaro v2.4.0 (Database: Jan. 2024 release)