Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EGCBKGKP_15 | 86186 | 87232 | clbA | ARO:3002814 | clbA | 92.77 | 99.71 | CP006845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EGCBKGKP_15 | 86186 | 87229 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 99.33 | KR610408 |
| EGCBKGKP_8 | 97331 | 98707 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.07 | 100.00 | X08034 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EGCBKGKP_15 | 86186 | 87229 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.24 | 99.71 | WP_012116915.1 |
| EGCBKGKP_8 | 97337 | 98707 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
| EGCBKGKP_15 | 83917 | 84435 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| EGCBKGKP_52 | 5210 | 7807 | rphC | rifamycin-inactivating phosphotransferase RphC | INTERNAL_STOP | 80.94 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| EGCBKGKP_3 | 85488 | 86669 | capB | 0.0 | Capsule | Immune modulation | 81.79 | 99.66 | NP_391471 |
| EGCBKGKP_3 | 85024 | 85473 | capC | 1.23e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EGCBKGKP_24 | 31819 | 32955 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| EGCBKGKP_54 | 4254 | 5123 | pdxS | 6.31e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| EGCBKGKP_16 | 72060 | 72836 | CodY | 3.20e-125 | nutrient-responsive regulator | 80.69 | 100.00 | ACJ80679 |
| EGCBKGKP_25 | 23720 | 24112 | spxA1 | 1.69e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| EGCBKGKP_15 | 69700 | 69897 | CspA | 1.78e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| EGCBKGKP_1 | 40549 | 40743 | CspD | 4.02e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| EGCBKGKP_1 | 40549 | 40746 | CspB | 8.34e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| EGCBKGKP_15 | 69700 | 69894 | CspR | 8.84e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EGCBKGKP_1 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_2 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_3 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_4 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_5 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_6 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_7 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_8 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_9 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_10 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_11 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_12 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_13 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_14 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_15 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_16 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_17 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_18 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_19 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_20 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_21 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_22 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_23 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_24 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_25 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_26 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_27 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_29 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_31 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_32 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_33 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_34 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_35 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_37 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_38 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_39 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_40 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_41 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_42 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_43 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_44 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_45 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_46 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_47 | 1.0 | 0.0 | 1.0 |
| EGCBKGKP_48 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_49 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_50 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_51 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_52 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_53 | 0.0 | 1.0 | 0.0 |
| EGCBKGKP_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EGCBKGKP_4 | 133678 | 156384 | False | Siphoviridae | VOG4841, VOG4556, VOG6052, VOG0531, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG5910, VOG6163, VOG0801, VOG4619, VOG4660, VOG4612, VOG3390, VOG4705, VOG0641 |
| EGCBKGKP_5 | 15467 | 18725 | False | Unknown | VOG6546, VOG10937 |
| EGCBKGKP_5 | 38699 | 66751 | False | Siphoviridae | VOG7541, VOG7742, VOG6495, VOG5327, VOG1183, VOG0275, VOG5023, VOG3699, VOG2613, VOG0692, VOG4555, VOG3676, VOG5361, VOG0724, VOG2565, VOG11074, VOG0083, VOG0801, VOG4619, VOG4660, VOG4612, VOG3390, VOG4705, VOG5221, VOG4824, VOG0602 |
| EGCBKGKP_7 | 4115 | 12436 | False | Myoviridae | VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG3390, VOG4705, VOG0753 |
| EGCBKGKP_10 | 15655 | 45982 | False | Siphoviridae | VOG0136, VOG5221, VOG4705, VOG0804, VOG4856, VOG4619, VOG3463, VOG3462, VOG0801, VOG6163, VOG5852, VOG4586, VOG0207, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG2545, VOG0376, VOG5447, VOG0425, VOG5969, VOG1884, VOG0025, VOG9600, VOG4566, VOG3547, VOG4552, VOG0181 |
| EGCBKGKP_17 | 30184 | 64083 | False | Siphoviridae | VOG4707, VOG0641, VOG7896, VOG3390, VOG4612, VOG4660, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5361, VOG4553, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG0198, VOG4548, VOG0327, VOG4609, VOG10500, VOG0026, VOG1565, VOG0021, VOG1047, VOG7438 |
| EGCBKGKP_18 | 18555 | 47622 | False | Siphoviridae | VOG4666, VOG4574, VOG0136, VOG0753, VOG5535, VOG3390, VOG4599, VOG4605, VOG4545, VOG0725, VOG0799, VOG0724, VOG5660, VOG0816, VOG4623, VOG5872, VOG2621, VOG1329, VOG4555, VOG6778, VOG4564, VOG0720, VOG10227, VOG0796, VOG4681, VOG4972, VOG5447 |
| EGCBKGKP_18 | 49994 | 63940 | False | Siphoviridae | VOG0102, VOG6581, VOG0397, VOG8569, VOG4658, VOG1336, VOG0536, VOG0044, VOG0189, VOG9093, VOG1309, VOG4600, VOG4600, VOG4552, VOG0650, VOG11075, VOG9667, VOG8483 |
| EGCBKGKP_25 | 114538 | 124907 | False | Siphoviridae | VOG9667, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749 |
Phigaro v2.4.0 (Database: Jan. 2024 release)