Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IEDMDAKJ_111 | 444793 | 444089 | WalR | 4.12e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| IEDMDAKJ_133 | 1820 | 1626 | CspR | 3.19e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| IEDMDAKJ_133 | 1820 | 1623 | CspA | 4.89e-31 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IEDMDAKJ_11 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_22 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_33 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_44 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_55 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_66 | 1.0 | 0.0 | 1.0 |
| IEDMDAKJ_77 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_88 | 1.0 | 0.0 | 1.0 |
| IEDMDAKJ_99 | 1.0 | 0.0 | 1.0 |
| IEDMDAKJ_110 | 1.0 | 0.0 | 1.0 |
| IEDMDAKJ_111 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_122 | 1.0 | 0.0 | 1.0 |
| IEDMDAKJ_133 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_144 | 1.0 | 0.0 | 1.0 |
| IEDMDAKJ_160 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_161 | 1.0 | 0.0 | 1.0 |
| IEDMDAKJ_165 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_176 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_187 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_198 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_209 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_220 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_231 | 0.0 | 1.0 | 0.0 |
| IEDMDAKJ_242 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IEDMDAKJ_111 | 708295 | 712969 | False | Unknown | VOG4675, VOG9667, VOG3699, VOG4552, VOG4565, VOG7169 |
| IEDMDAKJ_187 | 226616 | 253178 | False | Siphoviridae | VOG1292, VOG4566, VOG4552, VOG4693, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG0723, VOG9583, VOG0799, VOG0725, VOG1323, VOG4545, VOG0801, VOG3462, VOG3463, VOG4660, VOG8294 |
| IEDMDAKJ_198 | 233807 | 255203 | False | Siphoviridae | VOG4599, VOG4856, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG5821, VOG4544, VOG0796, VOG0198 |
| IEDMDAKJ_198 | 256456 | 266820 | False | Unknown | VOG4693, VOG4552, VOG0189, VOG4855, VOG6545, VOG0322, VOG0535, VOG0650, VOG3549, VOG9667, VOG9667, VOG0862, VOG0054 |
| IEDMDAKJ_220 | 5377 | 38876 | False | Siphoviridae | VOG0685, VOG0283, VOG0226, VOG0514, VOG4799, VOG0198, VOG4841, VOG0741, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG4783, VOG4615, VOG0753, VOG0054, VOG1521 |
Phigaro v2.4.0 (Database: Jan. 2024 release)